CX290704

Overview
NameCX290704
Unique NameCX290704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_SHEAM (Ribosomal RNA large subunit methyltransferase N OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rlmN PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45
Identity = 103/231 (44.59%), Postives = 141/231 (61.04%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--SEVGS--ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R T+CVSSQVGCA+ C FC T + G  R+LT +EIV Q       L    E G   I+NVV MGMGEPL  + NV+ A NIM+ + G   S R+VT+STSG+VP L +  +  + ALAVS++A  DE+R+ ++PIN+KY L   +  +R  L     N  +V  EYVML  +NDS D A  L  L++  PCKINLI FNP+ GS +  +++ ++  F  +L     TV +R
Sbjct:  103 RATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFQKETGERPISNVVMMGMGEPLLNLANVVPAMNIMLDDYGFGLSKRRVTLSTSGVVPALDKLGDVIDVALAVSIHAPNDELRDVLVPINKKYPLQEFLAAIRRYLEKSNANRGRVTLEYVMLDHINDSTDQAHELAKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFAKVLMEYDLTVIVR 333          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RALSO (Ribosomal RNA large subunit methyltransferase N OS=Ralstonia solanacearum GN=rlmN PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45
Identity = 97/232 (41.81%), Postives = 138/232 (59.48%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R T+CVSSQ GCA+NC+FC TG+ G  R+L+  EIV Q   A   +  ++G        ITNVV MGMGEPL   + V+ A  +M+ +     S R+VT+STSG+VP + +   +   ALAVSL+A+ D +R+ ++P+N+KY L  L+   R  L F     + FEY ML GVNDS + A+ L+ +V  +PCK NLI FNP   S    + +E++  F  +L  AG    +R
Sbjct:  102 RGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSQDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIR 333          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_PSYCK (Ribosomal RNA large subunit methyltransferase N OS=Psychrobacter cryohalolentis (strain K5) GN=rlmN PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45
Identity = 100/241 (41.49%), Postives = 149/241 (61.83%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG-------------SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE---ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG--CTV 696
            GR T+CVSSQVGCA++C FC TG+ G +R LTAAEI+ Q   A     ++               ++TNVV MGMGEPL     V+ +  +M+ +     S R+VT+STSG+VP++ +   E + ALA+SL+A  DE+RN ++PIN+KY L  L+   R    +++ ++   V  EYVML GVNDS + A++L+ L+  +P KINLI FNP   + +  +++ ++  F NIL+ AG  CT+
Sbjct:  134 GRKTLCVSSQVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQELDVALAISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQLVALLGNLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTI 374          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BDEBA (Ribosomal RNA large subunit methyltransferase N OS=Bdellovibrio bacteriovorus GN=rlmN PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45
Identity = 95/225 (42.22%), Postives = 141/225 (62.67%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R T+C+SS+VGC M C+FC+TG+  LKR L   +IV Q +     L+ E   ITN+VFMGMGEPL   E V K  +++    G++ S +K+TVSTSG+VP++ + + ++   LAVSLN   DE+R+ +MPIN+++    L+E  +E      + K+ FEYV+L G+ D  + A++L+ LV+ +PCKIN+I FN H GS +    D+ +  F   L   G  V LR
Sbjct:  125 RLTLCISSEVGCNMACKFCFTGKQKLKRRLRTEDIVGQFMQVHDRLA-EGQRITNIVFMGMGEPLDNPEAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWR-VADAKVRLAVSLNGPNDEIRSQVMPINKRWDTKALLEACKEHYRVSKD-KITFEYVLLKGITDQLEHARQLVKLVKDVPCKINIIPFNEHPGSGYERPDDDTIQAFHTELMNLGAHVLLR 346          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_SHEPA (Ribosomal RNA large subunit methyltransferase N OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 102/231 (44.16%), Postives = 144/231 (62.34%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R T+CVSSQVGCA+ C FC T + G  R+LT AEIV Q    A F   +  +    ITNVV MGMGEPL  ++NVI A +IM+ + G   S R+VT+STSG+VP L +  +  + ALAVS++A  DE+R+ ++P+N+KY L   +  +R  +     N  +V  EYVML  +NDS D A  L  L++  PCK+NLI FNP+ GS +  +++ ++  F  +L   G TV +R
Sbjct:  103 RATLCVSSQVGCALECTFCSTAQQGFNRNLTVAEIVGQIWRVADFIGFVKDTGERPITNVVMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDVLDVALAVSIHAPNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVR 333          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_SHELP (Ribosomal RNA large subunit methyltransferase N OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rlmN PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 103/231 (44.59%), Postives = 142/231 (61.47%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--SEVGS--ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R T+CVSSQVGCA+ C FC T + G  R+LT +EIV Q       L    E G   I+NVV MGMGEPL  ++NV+ A +IM+ + G   S R+VTVSTSG+VP L    +  + ALAVS++A  DE+R+ ++P+N+KY L   +  +R  L     N  +V  EYVML  +NDS D A  L  L++  PCKINLI FNP+ GS +  +++ ++  F  +L   G TV +R
Sbjct:  103 RATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFQKETGERPISNVVMMGMGEPLLNLKNVMPAIDIMLDDFGFSLSKRRVTVSTSGVVPALDILGDNLDVALAVSIHAPNDELRDVLVPVNKKYPLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHELAELMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVR 333          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_SHEDO (Ribosomal RNA large subunit methyltransferase N OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rlmN PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 101/231 (43.72%), Postives = 145/231 (62.77%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R T+CVSSQVGCA+ C FC TG+ G  R+LT +EIV Q    A F   + ++    ITNVV MGMGEPL  ++NVI A +IM+ + G   S R+VT+STSG+VP L    +  + ALAVS++A  DE+R+ ++P+N+KY L   +  +R  +     N  +V  EYVML  +NDS + A  L  L++  PCK+NLI FNP+ GS +  +++ ++  F  +L   G TV +R
Sbjct:  103 RATLCVSSQVGCALECTFCSTGQQGFNRNLTVSEIVGQIWRVAQFLGFVKTTGERPITNVVMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDSIDVALAVSIHAPNDELRDILVPVNKKYPLAEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVR 333          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_PSEMY (Ribosomal RNA large subunit methyltransferase N OS=Pseudomonas mendocina (strain ymp) GN=rlmN PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 98/231 (42.42%), Postives = 143/231 (61.90%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            GR T+CVSSQ GCA++C FC TG+ G    LT+AEI+ Q   A +   +       +ITNVV MGMGEPL   +NV+ A  IM+ + G   S RKVT+STSG+VP + +     + +LA+SL+A  DE+RN ++PIN+KY L +L+   +  +      +VL  EY +L GVND  + A+++I L+  +PCKINLI FNP   S +   ++  +  F+++L  AG  V +R
Sbjct:  104 GRGTLCVSSQAGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDELRNQLVPINKKYPLDMLLAACKRYVAKLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVR 334          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_CAMC5 (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter curvus (strain 525.92) GN=rlmN PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 100/227 (44.05%), Postives = 142/227 (62.56%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R T+CVSSQVGC M C FC T + GLKR+L+  EIV Q ++ ++          NVV+MGMGEPL  + NV KA  I+    GL  SPR+ TVSTSGL  Q+K+ L E +    LA+SL+A T+E+R+ +MP+N+ Y +  +++ +R         +V+FEY+++ G+NDS  DAK L+ L+ GI  K+NLI FNPH GS++       M+EF+  L   G T  +R
Sbjct:  108 RYTICVSSQVGCKMGCLFCLTAKGGLKRNLSPGEIVGQILWIKKTNHIPYERRVNVVYMGMGEPLDNLANVAKAIQILKEPDGLAISPRRQTVSTSGLGAQIKK-LGEMDLGVLLAISLHAVTNELRSKLMPVNKAYNIEAVMDAVR-GFPIDMRKRVMFEYLVIRGMNDSVKDAKTLVKLLHGIKAKVNLIYFNPHEGSEYGRPELADMLEFQEYLRAHGVTCTIR 332          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RALPJ (Ribosomal RNA large subunit methyltransferase N OS=Ralstonia pickettii (strain 12J) GN=rlmN PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.090e-45
Identity = 96/232 (41.38%), Postives = 138/232 (59.48%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R T+CVSSQ GCA+NC+FC TG+ G  R+L+  EI+ Q   A   +  ++G        ITNVV MGMGEPL   + V+ A  +M+ +     S R+VTVSTSG+VP + +   +   ALAVSL+A+ D +R+ ++P+N+KY L  L+   R  L F     + FEY ML GVND+ + A+ L+ +V  +PCK NLI FNP   S    + +E++  F  +L  AG    +R
Sbjct:  102 RGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIR 333          
The following BLAST results are available for this feature:
BLAST of CX290704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_SHEAM5.329e-4544.59Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RALSO5.329e-4541.81Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PSYCK5.329e-4541.49Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_BDEBA5.329e-4542.22Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SHEPA6.960e-4544.16Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SHELP6.960e-4544.59Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SHEDO6.960e-4543.72Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PSEMY6.960e-4542.42Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CAMC56.960e-4544.05Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RALPJ9.090e-4541.38Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionC02026C09SK IF1 Citrus clementina cDNA clone C02026C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290704 ID=CX290704; Name=CX290704; organism=Citrus clementina; type=EST; length=706bp
GGAAACTGTTGTCATCCATGCAATAGGGGCAGGACAACTGTTTGTGTTTC
AAGTCAAGTGGGATGCGCTATGAATTGTCAGTTCTGCTACACTGGCAGGA
TGGGTCTGAAGAGGCATCTGACTGCAGCTGAGATTGTAGAACAAGCAGTA
TTTGCTCGGCGTCTGCTCTCGAGTGAAGTTGGCTCGATTACAAATGTTGT
ATTTATGGGAATGGGAGAGCCACTTCACAAGGTTGAAAATGTTATAAAAG
CTGCCAACATAATGGTGCATGAACAGGGTCTTCACTTCAGTCCTCGCAAG
GTCACTGTTTCTACAAGTGGGCTTGTTCCCCAGCTGAAACAATTTCTCAA
TGAATCTAATTGTGCTTTAGCTGTTAGTTTAAACGCTACAACTGATGAGG
TCAGAAACTGGATCATGCCGATTAATCGGAAGTATAAACTAGGACTGCTT
ATTGAGACTCTTCGGGAGGAACTTCACTTCAAAAATAATTACAAAGTTCT
CTTTGAATACGTAATGCTTGCCGGAGTTAATGACAGCTTTGATGATGCAA
AGAGGCTTATTGGTCTTGTTCAGGGCATTCCATGCAAGATCAATCTCATT
TCCTTCAATCCTCATTGTGGATCACAGTTTACACCAACCACCGATGAGAA
AATGATTGAGTTTCGGAATATTTTGGCCGGGGCTGGGTGCACTGTTTTCT
TGCGTC
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