CX290704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_SHEAM (Ribosomal RNA large subunit methyltransferase N OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rlmN PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45 Identity = 103/231 (44.59%), Postives = 141/231 (61.04%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--SEVGS--ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q L E G I+NVV MGMGEPL + NV+ A NIM+ + G S R+VT+STSG+VP L + + + ALAVS++A DE+R+ ++PIN+KY L + +R L N +V EYVML +NDS D A L L++ PCKINLI FNP+ GS + +++ ++ F +L TV +R Sbjct: 103 RATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFQKETGERPISNVVMMGMGEPLLNLANVVPAMNIMLDDYGFGLSKRRVTLSTSGVVPALDKLGDVIDVALAVSIHAPNDELRDVLVPINKKYPLQEFLAAIRRYLEKSNANRGRVTLEYVMLDHINDSTDQAHELAKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFAKVLMEYDLTVIVR 333
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RALSO (Ribosomal RNA large subunit methyltransferase N OS=Ralstonia solanacearum GN=rlmN PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45 Identity = 97/232 (41.81%), Postives = 138/232 (59.48%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R T+CVSSQ GCA+NC+FC TG+ G R+L+ EIV Q A + ++G ITNVV MGMGEPL + V+ A +M+ + S R+VT+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F + FEY ML GVNDS + A+ L+ +V +PCK NLI FNP S + +E++ F +L AG +R Sbjct: 102 RGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSQDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIR 333
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_PSYCK (Ribosomal RNA large subunit methyltransferase N OS=Psychrobacter cryohalolentis (strain K5) GN=rlmN PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45 Identity = 100/241 (41.49%), Postives = 149/241 (61.83%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG-------------SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE---ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG--CTV 696 GR T+CVSSQVGCA++C FC TG+ G +R LTAAEI+ Q A ++ ++TNVV MGMGEPL V+ + +M+ + S R+VT+STSG+VP++ + E + ALA+SL+A DE+RN ++PIN+KY L L+ R +++ ++ V EYVML GVNDS + A++L+ L+ +P KINLI FNP + + +++ ++ F NIL+ AG CT+ Sbjct: 134 GRKTLCVSSQVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQELDVALAISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQLVALLGNLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTI 374
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BDEBA (Ribosomal RNA large subunit methyltransferase N OS=Bdellovibrio bacteriovorus GN=rlmN PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45 Identity = 95/225 (42.22%), Postives = 141/225 (62.67%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R T+C+SS+VGC M C+FC+TG+ LKR L +IV Q + L+ E ITN+VFMGMGEPL E V K +++ G++ S +K+TVSTSG+VP++ + + ++ LAVSLN DE+R+ +MPIN+++ L+E +E + K+ FEYV+L G+ D + A++L+ LV+ +PCKIN+I FN H GS + D+ + F L G V LR Sbjct: 125 RLTLCISSEVGCNMACKFCFTGKQKLKRRLRTEDIVGQFMQVHDRLA-EGQRITNIVFMGMGEPLDNPEAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWR-VADAKVRLAVSLNGPNDEIRSQVMPINKRWDTKALLEACKEHYRVSKD-KITFEYVLLKGITDQLEHARQLVKLVKDVPCKINIIPFNEHPGSGYERPDDDTIQAFHTELMNLGAHVLLR 346
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_SHEPA (Ribosomal RNA large subunit methyltransferase N OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rlmN PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45 Identity = 102/231 (44.16%), Postives = 144/231 (62.34%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R T+CVSSQVGCA+ C FC T + G R+LT AEIV Q A F + + ITNVV MGMGEPL ++NVI A +IM+ + G S R+VT+STSG+VP L + + + ALAVS++A DE+R+ ++P+N+KY L + +R + N +V EYVML +NDS D A L L++ PCK+NLI FNP+ GS + +++ ++ F +L G TV +R Sbjct: 103 RATLCVSSQVGCALECTFCSTAQQGFNRNLTVAEIVGQIWRVADFIGFVKDTGERPITNVVMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDVLDVALAVSIHAPNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVR 333
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_SHELP (Ribosomal RNA large subunit methyltransferase N OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rlmN PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45 Identity = 103/231 (44.59%), Postives = 142/231 (61.47%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--SEVGS--ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q L E G I+NVV MGMGEPL ++NV+ A +IM+ + G S R+VTVSTSG+VP L + + ALAVS++A DE+R+ ++P+N+KY L + +R L N +V EYVML +NDS D A L L++ PCKINLI FNP+ GS + +++ ++ F +L G TV +R Sbjct: 103 RATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFQKETGERPISNVVMMGMGEPLLNLKNVMPAIDIMLDDFGFSLSKRRVTVSTSGVVPALDILGDNLDVALAVSIHAPNDELRDVLVPVNKKYPLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHELAELMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVR 333
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_SHEDO (Ribosomal RNA large subunit methyltransferase N OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rlmN PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45 Identity = 101/231 (43.72%), Postives = 145/231 (62.77%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R T+CVSSQVGCA+ C FC TG+ G R+LT +EIV Q A F + ++ ITNVV MGMGEPL ++NVI A +IM+ + G S R+VT+STSG+VP L + + ALAVS++A DE+R+ ++P+N+KY L + +R + N +V EYVML +NDS + A L L++ PCK+NLI FNP+ GS + +++ ++ F +L G TV +R Sbjct: 103 RATLCVSSQVGCALECTFCSTGQQGFNRNLTVSEIVGQIWRVAQFLGFVKTTGERPITNVVMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDSIDVALAVSIHAPNDELRDILVPVNKKYPLAEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVR 333
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_PSEMY (Ribosomal RNA large subunit methyltransferase N OS=Pseudomonas mendocina (strain ymp) GN=rlmN PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45 Identity = 98/231 (42.42%), Postives = 143/231 (61.90%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 GR T+CVSSQ GCA++C FC TG+ G LT+AEI+ Q A + + +ITNVV MGMGEPL +NV+ A IM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+RN ++PIN+KY L +L+ + + +VL EY +L GVND + A+++I L+ +PCKINLI FNP S + ++ + F+++L AG V +R Sbjct: 104 GRGTLCVSSQAGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDELRNQLVPINKKYPLDMLLAACKRYVAKLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVR 334
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_CAMC5 (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter curvus (strain 525.92) GN=rlmN PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45 Identity = 100/227 (44.05%), Postives = 142/227 (62.56%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R T+CVSSQVGC M C FC T + GLKR+L+ EIV Q ++ ++ NVV+MGMGEPL + NV KA I+ GL SPR+ TVSTSGL Q+K+ L E + LA+SL+A T+E+R+ +MP+N+ Y + +++ +R +V+FEY+++ G+NDS DAK L+ L+ GI K+NLI FNPH GS++ M+EF+ L G T +R Sbjct: 108 RYTICVSSQVGCKMGCLFCLTAKGGLKRNLSPGEIVGQILWIKKTNHIPYERRVNVVYMGMGEPLDNLANVAKAIQILKEPDGLAISPRRQTVSTSGLGAQIKK-LGEMDLGVLLAISLHAVTNELRSKLMPVNKAYNIEAVMDAVR-GFPIDMRKRVMFEYLVIRGMNDSVKDAKTLVKLLHGIKAKVNLIYFNPHEGSEYGRPELADMLEFQEYLRAHGVTCTIR 332
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RALPJ (Ribosomal RNA large subunit methyltransferase N OS=Ralstonia pickettii (strain 12J) GN=rlmN PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 9.090e-45 Identity = 96/232 (41.38%), Postives = 138/232 (59.48%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q A + ++G ITNVV MGMGEPL + V+ A +M+ + S R+VTVSTSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F + FEY ML GVND+ + A+ L+ +V +PCK NLI FNP S + +E++ F +L AG +R Sbjct: 102 RGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIR 333 The following BLAST results are available for this feature:
BLAST of CX290704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290704 ID=CX290704; Name=CX290704; organism=Citrus clementina; type=EST; length=706bpback to top |