CX290704

Overview
NameCX290704
Unique NameCX290704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATW (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rlmN PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 99/232 (42.67%), Postives = 145/232 (62.50%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            GR T+CVSSQVGC +NC FC TG+ G  R+L+AAE++ Q   A R LS   G    ++TN+V MGMGEPL   ENV+ A +IM+ +     S RKVT+STSG+VP++   L +S  +LAVSL+A  D +RN I+PIN+KY +  L+E  +       +  + FEY ++  VND+  DA+ L+ L++   +P KINLI FNP+ G+ +   ++ ++  F+  L   G    +R
Sbjct:  101 GRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATT (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. tularensis GN=rlmN PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 99/232 (42.67%), Postives = 145/232 (62.50%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            GR T+CVSSQVGC +NC FC TG+ G  R+L+AAE++ Q   A R LS   G    ++TN+V MGMGEPL   ENV+ A +IM+ +     S RKVT+STSG+VP++   L +S  +LAVSL+A  D +RN I+PIN+KY +  L+E  +       +  + FEY ++  VND+  DA+ L+ L++   +P KINLI FNP+ G+ +   ++ ++  F+  L   G    +R
Sbjct:  101 GRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATN (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. novicida (strain U112) GN=rlmN PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 99/232 (42.67%), Postives = 145/232 (62.50%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            GR T+CVSSQVGC +NC FC TG+ G  R+L+AAE++ Q   A R LS   G    ++TN+V MGMGEPL   ENV+ A +IM+ +     S RKVT+STSG+VP++   L +S  +LAVSL+A  D +RN I+PIN+KY +  L+E  +       +  + FEY ++  VND+  DA+ L+ L++   +P KINLI FNP+ G+ +   ++ ++  F+  L   G    +R
Sbjct:  101 GRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATM (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rlmN PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 99/232 (42.67%), Postives = 145/232 (62.50%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            GR T+CVSSQVGC +NC FC TG+ G  R+L+AAE++ Q   A R LS   G    ++TN+V MGMGEPL   ENV+ A +IM+ +     S RKVT+STSG+VP++   L +S  +LAVSL+A  D +RN I+PIN+KY +  L+E  +       +  + FEY ++  VND+  DA+ L+ L++   +P KINLI FNP+ G+ +   ++ ++  F+  L   G    +R
Sbjct:  101 GRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQNGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRAT1 (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rlmN PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 99/232 (42.67%), Postives = 145/232 (62.50%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            GR T+CVSSQVGC +NC FC TG+ G  R+L+AAE++ Q   A R LS   G    ++TN+V MGMGEPL   ENV+ A +IM+ +     S RKVT+STSG+VP++   L +S  +LAVSL+A  D +RN I+PIN+KY +  L+E  +       +  + FEY ++  VND+  DA+ L+ L++   +P KINLI FNP+ G+ +   ++ ++  F+  L   G    +R
Sbjct:  101 GRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_CAMJR (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter jejuni (strain RM1221) GN=rlmN PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 97/230 (42.17%), Postives = 146/230 (63.48%), Query Frame = 1
Query:   22 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            +  R T+CVSSQVGC   C FC T + GLKR+L+A EIV Q ++ ++  +       N+V+MGMGEPL  ++NV KA  I+   +GL  SPR+ T+STSGL  Q+K+ L + N    LA+SL+A  DE+R  +MPIN+ Y +  +++ +R E       +V+FEY+++ G+ND  + AK L+ L+ GI  K+NLI FNPH G  +   + E  I+F+++L+  G T  +R
Sbjct:  108 SHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRINIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE-LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTIR 335          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BEII9 (Ribosomal RNA large subunit methyltransferase N OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rlmN PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 102/242 (42.15%), Postives = 148/242 (61.16%), Query Frame = 1
Query:    7 CCHPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG---------------SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            C +     R T+C+SSQVGC + C FC+TG   L R+L+A EIV Q V AR  L    G                ITN+VFMGMGEPL+  +NV KA +++   +GL  S R++TVST+G+VPQ++    E+   LAVSL+A  D++R+ ++P+N+KY +  L+E  R      N  ++ FEYVML  +NDS  +A+ LI L++GIP KINLI FNP  G+ +  +  +++  F +I+  AG
Sbjct:  113 CVYIPESDRGTLCISSQVGCTLTCSFCHTGTQKLVRNLSAREIVSQLVVAREKLGDFPGLVPPKDGLLPTEGNRPITNIVFMGMGEPLYNFDNVRKAVSVLSDGEGLSLSRRRITVSTAGVVPQMEALGREAGSMLAVSLHAVRDDLRDKLVPLNKKYPIKTLLEACRTYPGASNARRITFEYVMLKDINDSPAEARELIRLLKGIPAKINLIPFNPWPGAPYDCSDWDRIERFSDIVFNAG 354          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_MARMM (Ribosomal RNA large subunit methyltransferase N OS=Maricaulis maris (strain MCS10) GN=rlmN PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47
Identity = 101/221 (45.70%), Postives = 148/221 (66.97%), Query Frame = 1
Query:   40 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL-----SSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            +CVSSQVGC +NC FC+TG   L R+LTAAEIV Q + AR  L     S+E   ITN+VFMGMGEPL+ +++V  + +I+   +G+  S R+ TVSTSG+VP++++    +   LA+SL+AT D +R+ ++P+N+KY L  L+  +R      N+ +V FEYVML GVNDS  +AK L+ L++GIP KINLI FNP   S +  +  +++  F +++  AG
Sbjct:  131 LCVSSQVGCTLNCTFCHTGTQALVRNLTAAEIVAQVMIARDDLDEWPTSNENRKITNIVFMGMGEPLYNLDHVATSIDIISDGEGIAISRRRTTVSTSGVVPKIEELGARTGTMLAISLHATNDTLRDELVPLNKKYPLVELMNAIRAYPGLGNSKRVTFEYVMLKGVNDSLAEAKALVKLLKGIPAKINLIPFNPWPKSPYECSDWDQIEAFADVVNKAG 351          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_GLUOX (Ribosomal RNA large subunit methyltransferase N OS=Gluconobacter oxydans GN=rlmN PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47
Identity = 99/226 (43.81%), Postives = 144/226 (63.72%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            R  VC+SSQVGC ++C FC+TG   L R+L  AEIV Q + AR                ++ +V MGMGEPL+  ENV KA  I++  +G+  S R++T+STSG+VP + +  +E    LA+SL+A T+E+R+ I+P+NRKY +  LI   R      N+ ++ FEY+ML GVNDS  DA+ L+ L++ +P K+NLI FNP  GS F P+T +++ +F NI+  AG
Sbjct:  147 RGAVCISSQVGCTLSCTFCHTGTQKLVRNLGPAEIVGQFMAARDSYGEWPSPSADMPRYLSTIVLMGMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISLHAVTNELRDQIVPLNRKYPIEELIAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRLIRDLPAKVNLIPFNPWPGSDFQPSTRQQLTKFANIVMDAG 372          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_CAMJJ (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rlmN PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47
Identity = 97/230 (42.17%), Postives = 145/230 (63.04%), Query Frame = 1
Query:   22 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            +  R T+CVSSQVGC   C FC T + GLKR+L+  EIV Q ++ ++  +       N+V+MGMGEPL  ++NV KA  I+    GL  SPR+ T+STSGL  Q+K+ L + N    LA+SL+A  DE+R  +MPIN+ Y +  +++ +R E       +V+FEY+++ G+ND  + AK L+ L+ GI  K+NLI FNPH GS +   + E  I+F+++L+  G T  +R
Sbjct:  108 SHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSTGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE-LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIR 335          
The following BLAST results are available for this feature:
BLAST of CX290704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_FRATW1.957e-4742.67Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_FRATT1.957e-4742.67Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_FRATN1.957e-4742.67Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_FRATM1.957e-4742.67Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_FRAT11.957e-4742.67Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CAMJR1.957e-4742.17Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_BEII91.957e-4742.15Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_MARMM2.556e-4745.70Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_GLUOX2.556e-4743.81Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CAMJJ2.556e-4742.17Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionC02026C09SK IF1 Citrus clementina cDNA clone C02026C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290704 ID=CX290704; Name=CX290704; organism=Citrus clementina; type=EST; length=706bp
GGAAACTGTTGTCATCCATGCAATAGGGGCAGGACAACTGTTTGTGTTTC
AAGTCAAGTGGGATGCGCTATGAATTGTCAGTTCTGCTACACTGGCAGGA
TGGGTCTGAAGAGGCATCTGACTGCAGCTGAGATTGTAGAACAAGCAGTA
TTTGCTCGGCGTCTGCTCTCGAGTGAAGTTGGCTCGATTACAAATGTTGT
ATTTATGGGAATGGGAGAGCCACTTCACAAGGTTGAAAATGTTATAAAAG
CTGCCAACATAATGGTGCATGAACAGGGTCTTCACTTCAGTCCTCGCAAG
GTCACTGTTTCTACAAGTGGGCTTGTTCCCCAGCTGAAACAATTTCTCAA
TGAATCTAATTGTGCTTTAGCTGTTAGTTTAAACGCTACAACTGATGAGG
TCAGAAACTGGATCATGCCGATTAATCGGAAGTATAAACTAGGACTGCTT
ATTGAGACTCTTCGGGAGGAACTTCACTTCAAAAATAATTACAAAGTTCT
CTTTGAATACGTAATGCTTGCCGGAGTTAATGACAGCTTTGATGATGCAA
AGAGGCTTATTGGTCTTGTTCAGGGCATTCCATGCAAGATCAATCTCATT
TCCTTCAATCCTCATTGTGGATCACAGTTTACACCAACCACCGATGAGAA
AATGATTGAGTTTCGGAATATTTTGGCCGGGGCTGGGTGCACTGTTTTCT
TGCGTC
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