CX290704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATW (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rlmN PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47 Identity = 99/232 (42.67%), Postives = 145/232 (62.50%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 GR T+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G ++TN+V MGMGEPL ENV+ A +IM+ + S RKVT+STSG+VP++ L +S +LAVSL+A D +RN I+PIN+KY + L+E + + + FEY ++ VND+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R Sbjct: 101 GRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATT (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. tularensis GN=rlmN PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47 Identity = 99/232 (42.67%), Postives = 145/232 (62.50%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 GR T+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G ++TN+V MGMGEPL ENV+ A +IM+ + S RKVT+STSG+VP++ L +S +LAVSL+A D +RN I+PIN+KY + L+E + + + FEY ++ VND+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R Sbjct: 101 GRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATN (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. novicida (strain U112) GN=rlmN PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47 Identity = 99/232 (42.67%), Postives = 145/232 (62.50%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 GR T+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G ++TN+V MGMGEPL ENV+ A +IM+ + S RKVT+STSG+VP++ L +S +LAVSL+A D +RN I+PIN+KY + L+E + + + FEY ++ VND+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R Sbjct: 101 GRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATM (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rlmN PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47 Identity = 99/232 (42.67%), Postives = 145/232 (62.50%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 GR T+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G ++TN+V MGMGEPL ENV+ A +IM+ + S RKVT+STSG+VP++ L +S +LAVSL+A D +RN I+PIN+KY + L+E + + + FEY ++ VND+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R Sbjct: 101 GRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQNGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRAT1 (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rlmN PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47 Identity = 99/232 (42.67%), Postives = 145/232 (62.50%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 GR T+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G ++TN+V MGMGEPL ENV+ A +IM+ + S RKVT+STSG+VP++ L +S +LAVSL+A D +RN I+PIN+KY + L+E + + + FEY ++ VND+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R Sbjct: 101 GRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_CAMJR (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter jejuni (strain RM1221) GN=rlmN PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47 Identity = 97/230 (42.17%), Postives = 146/230 (63.48%), Query Frame = 1 Query: 22 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 + R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++ + N+V+MGMGEPL ++NV KA I+ +GL SPR+ T+STSGL Q+K+ L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++ G+ND + AK L+ L+ GI K+NLI FNPH G + + E I+F+++L+ G T +R Sbjct: 108 SHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRINIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE-LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTIR 335
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BEII9 (Ribosomal RNA large subunit methyltransferase N OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rlmN PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47 Identity = 102/242 (42.15%), Postives = 148/242 (61.16%), Query Frame = 1 Query: 7 CCHPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG---------------SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 C + R T+C+SSQVGC + C FC+TG L R+L+A EIV Q V AR L G ITN+VFMGMGEPL+ +NV KA +++ +GL S R++TVST+G+VPQ++ E+ LAVSL+A D++R+ ++P+N+KY + L+E R N ++ FEYVML +NDS +A+ LI L++GIP KINLI FNP G+ + + +++ F +I+ AG Sbjct: 113 CVYIPESDRGTLCISSQVGCTLTCSFCHTGTQKLVRNLSAREIVSQLVVAREKLGDFPGLVPPKDGLLPTEGNRPITNIVFMGMGEPLYNFDNVRKAVSVLSDGEGLSLSRRRITVSTAGVVPQMEALGREAGSMLAVSLHAVRDDLRDKLVPLNKKYPIKTLLEACRTYPGASNARRITFEYVMLKDINDSPAEARELIRLLKGIPAKINLIPFNPWPGAPYDCSDWDRIERFSDIVFNAG 354
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_MARMM (Ribosomal RNA large subunit methyltransferase N OS=Maricaulis maris (strain MCS10) GN=rlmN PE=3 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47 Identity = 101/221 (45.70%), Postives = 148/221 (66.97%), Query Frame = 1 Query: 40 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL-----SSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 +CVSSQVGC +NC FC+TG L R+LTAAEIV Q + AR L S+E ITN+VFMGMGEPL+ +++V + +I+ +G+ S R+ TVSTSG+VP++++ + LA+SL+AT D +R+ ++P+N+KY L L+ +R N+ +V FEYVML GVNDS +AK L+ L++GIP KINLI FNP S + + +++ F +++ AG Sbjct: 131 LCVSSQVGCTLNCTFCHTGTQALVRNLTAAEIVAQVMIARDDLDEWPTSNENRKITNIVFMGMGEPLYNLDHVATSIDIISDGEGIAISRRRTTVSTSGVVPKIEELGARTGTMLAISLHATNDTLRDELVPLNKKYPLVELMNAIRAYPGLGNSKRVTFEYVMLKGVNDSLAEAKALVKLLKGIPAKINLIPFNPWPKSPYECSDWDQIEAFADVVNKAG 351
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_GLUOX (Ribosomal RNA large subunit methyltransferase N OS=Gluconobacter oxydans GN=rlmN PE=3 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47 Identity = 99/226 (43.81%), Postives = 144/226 (63.72%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 R VC+SSQVGC ++C FC+TG L R+L AEIV Q + AR ++ +V MGMGEPL+ ENV KA I++ +G+ S R++T+STSG+VP + + +E LA+SL+A T+E+R+ I+P+NRKY + LI R N+ ++ FEY+ML GVNDS DA+ L+ L++ +P K+NLI FNP GS F P+T +++ +F NI+ AG Sbjct: 147 RGAVCISSQVGCTLSCTFCHTGTQKLVRNLGPAEIVGQFMAARDSYGEWPSPSADMPRYLSTIVLMGMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISLHAVTNELRDQIVPLNRKYPIEELIAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRLIRDLPAKVNLIPFNPWPGSDFQPSTRQQLTKFANIVMDAG 372
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_CAMJJ (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rlmN PE=3 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47 Identity = 97/230 (42.17%), Postives = 145/230 (63.04%), Query Frame = 1 Query: 22 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 + R T+CVSSQVGC C FC T + GLKR+L+ EIV Q ++ ++ + N+V+MGMGEPL ++NV KA I+ GL SPR+ T+STSGL Q+K+ L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++ G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T +R Sbjct: 108 SHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSTGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE-LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIR 335 The following BLAST results are available for this feature:
BLAST of CX290704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290704 ID=CX290704; Name=CX290704; organism=Citrus clementina; type=EST; length=706bpback to top |