CX290704

Overview
NameCX290704
Unique NameCX290704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BART1 (Ribosomal RNA large subunit methyltransferase N OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rlmN PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47
Identity = 106/234 (45.30%), Postives = 142/234 (60.68%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--------------EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+C+SSQVGC + C FC+TG   L R+LTA EI+ Q + AR  L                E   +TN+V MGMGEPL+  E V KA  I     GL  S R++T+STSG+VP + +   E    LA+SL+A  D VR+ ++PIN+KY L LL++  R      N  ++ FEYVML  +NDS DDAKRLI L++GIP KINLI FNP  GS +  +  E++  F +++  AG
Sbjct:  134 GRGTLCLSSQVGCTLTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPVEGRKVTNIVMMGMGEPLYNYEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLHAVHDTVRDMLVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAG 367          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHOP5 (Ribosomal RNA large subunit methyltransferase N OS=Rhodopseudomonas palustris (strain BisA53) GN=rlmN PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 105/240 (43.75%), Postives = 148/240 (61.67%), Query Frame = 1
Query:    7 CCHPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SSEVGS----ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            C +     R T+CVSSQVGC +NC FC+TG   L R+LTA EIV Q + A+  L         + + G     ITNVV MGMGEPL+  E V  A  I+   +G+  S R++T+STSG+VP + +  +E    LA+SL+A  DE+RN ++P+N+KY L  L++  R+     N  ++ FEYVML GVNDS DDAK L+ L++G+P KINLI FNP  GS +  +  +++ +F   +  AG
Sbjct:  122 CVYIPETDRGTLCVSSQVGCTLNCSFCHTGTQKLVRNLTAGEIVGQVMVAKDRLGDWPMAVASTQDAGENNRLITNVVMMGMGEPLYNFEAVRDALLIVSDNEGIGLSRRRITLSTSGVVPNIFRTGDEIGVMLAISLHAVRDELRNELVPLNKKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKGVPAKINLIPFNPWPGSAYQCSDWDQIEKFSEYIFNAG 361          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHIME (Ribosomal RNA large subunit methyltransferase N OS=Rhizobium meliloti GN=rlmN PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 102/234 (43.59%), Postives = 144/234 (61.54%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+C+SSQVGC + C FC+TG   L R+LTA EI+ Q + AR               ++ +E   ITN+V MGMGEPL+  ENV  A  I     GL  S R++T+STSG+VP++ +   E    LA+SL+A  D++R+ ++PIN+KY L  L+E  R      N  ++ FEYVML  VNDS +DAK L+ L++GIP KINLI FNP  G+ +  +  E++ +F + +  AG
Sbjct:  132 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILSQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVMMGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLHAVRDDLRDMLVPINKKYPLKQLMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAG 365          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_ACICJ (Ribosomal RNA large subunit methyltransferase N OS=Acidiphilium cryptum (strain JF-5) GN=rlmN PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 103/226 (45.58%), Postives = 143/226 (63.27%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---SEVGS----ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            R  VC+SSQVGC ++C+FC+TG   L R+L+AAEIV Q +  R       S  G     ++ +V MGMGEPL+  ENV KA  I++  +G+  S R++T+STSG+VP + +   E    LAVSL+A TD+VR+ I+P+NRKY +  LI   R      N  ++ FEYVML G+NDS  DA+RL+ L+ GIP K+NLI FNP  GS +  ++   +  F NI+  AG
Sbjct:  137 RGAVCLSSQVGCTLSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKGETPRLLSTIVLMGMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSLHAVTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLVELIDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAG 362          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_SINMW (Ribosomal RNA large subunit methyltransferase N OS=Sinorhizobium medicae (strain WSM419) GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 103/234 (44.02%), Postives = 144/234 (61.54%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+C+SSQVGC + C FC+TG   L R+LTA EI+ Q + AR               ++ +E   ITNVV MGMGEPL+  ENV  A  I     GL  S R++T+STSG+VP++ +   E    LA+SL+A  D++R+ ++PIN+KY L  L+E  R      N  ++ FEYVML  VNDS +DAK L+ L++GIP KINLI FNP  G+ +  +  E++ +F + +  AG
Sbjct:  134 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPDRDTPQGAIVPAEGRKITNVVMMGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLHAVRDDLRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAG 367          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BRUSU (Ribosomal RNA large subunit methyltransferase N OS=Brucella suis GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+C+SSQVGC + C FC+TG   L R+LT+ EI+ Q + AR               ++ +E   ITN+V MGMGEPL+  E V KA  I     G   S R++T+STSG+VP++ +  +E    LA+SL+A  DE+R+ ++PIN+KY L  LI+  RE     N  ++ FEYVML  +NDS DDAK L+ L+QGIP KINLI FNP  G+ +  +  E++ +F + +  AG
Sbjct:  133 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALLIASDGDGPSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHAVRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAG 366          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_NITHX (Ribosomal RNA large subunit methyltransferase N OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 102/235 (43.40%), Postives = 145/235 (61.70%), Query Frame = 1
Query:    7 CCHPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            C +     R T+CVSSQVGC +NC FC+TG   L R+LTA EIV Q + AR  L+             +TN+V MGMGEPL+  + V  A  I+   +G+  S R++T+STSG+VP + +   E    LA+SL+A  DE+RN ++P+NRKY +  L++  R+     N  ++ FEYVML GVNDS DDAK L+ L++GI  KINLI FNP  G+++  +  E++ +F   +  AG
Sbjct:  121 CVYIPETDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRETPHGNRLVTNIVMMGMGEPLYNFDAVRDALLIVADNEGIGISKRRITLSTSGVVPNIVRTGEEIGVMLAISLHAVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDAKLLVKLLKGIHAKINLIPFNPWPGTRYECSDWEQIEKFSEYVFNAG 355          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_MAGSA (Ribosomal RNA large subunit methyltransferase N OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rlmN PE=3 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 104/231 (45.02%), Postives = 145/231 (62.77%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVG-SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R  VC+S+QVGC + C+FC+TG   L R+L+AAEIV Q + AR          + G  ++N+V MGMGEPL+  ENV  A  I +  +G+  S R++T+STSG+VP +K+        LAVSL+A TDE+R+ IMPIN+KY L  L++  RE     N  ++ FEY+ML G+NDS  DA+ L+ LV+G+P K NLI FNP  GS+F     +    F +IL  AG +  +R
Sbjct:  186 RGAVCISTQVGCTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDDGGRQLSNIVVMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSLHAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALLKLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIR 416          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_CAMJ8 (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 97/230 (42.17%), Postives = 145/230 (63.04%), Query Frame = 1
Query:   22 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            +  R T+CVSSQVGC   C FC T + GLKR+L+A EIV Q ++ ++  +       N+V+MGMGEPL  ++NV KA  I+    GL  SPR+ T+STSGL  Q+K+ L + N    LA+SL+A  D +R  +MPIN+ Y +  +++ +R E       +V+FEY+++ G+ND  + AK L+ L+ GI  K+NLI FNPH GS +   + E  I+F+++L+  G T  +R
Sbjct:  108 SHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE-LGQMNLGVLLAISLHAVNDGLRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIR 335          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BUCBP (Ribosomal RNA large subunit methyltransferase N OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 100/238 (42.02%), Postives = 151/238 (63.45%), Query Frame = 1
Query:   10 CHPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK--VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            C P N+ RTT+C+SSQ+GC++ C FC TG+ G  ++L  +EI+ Q  + ++L+          ITNVV MGMGEPL  + NV+ A  IM+ E GL+ S   +T+ST+G+VP LK+     + +LAVSL+A+ + +RN +MPIN+KY +  ++  +++ L++ N  K  V  EYVML+G+ND+   A+ L  L++ IP KINLI +N   GS +  + D  +  F NIL   GC V +R
Sbjct:  107 CIPKNQ-RTTLCISSQLGCSLACSFCLTGQQGFNKNLNVSEIIGQVWYIQKLIYFSKINITNKITNVVLMGMGEPLLNLSNVVHALRIMLDEFGLNMSKNHITLSTAGIVPALKKLHTMIDVSLAVSLHASNNTIRNQLMPINKKYNIESVLCAIKKYLYYSNANKKRVTIEYVMLSGINDAAYHAEELFNLLKSIPHKINLIPWNHFSGSNYICSNDITINNFANILIKKGCIVTIR 343          
The following BLAST results are available for this feature:
BLAST of CX290704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_BART12.556e-4745.30Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RHOP53.338e-4743.75Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RHIME3.338e-4743.59Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ACICJ3.338e-4745.58Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SINMW4.359e-4744.02Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_BRUSU4.359e-4744.02Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_NITHX5.694e-4743.40Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_MAGSA5.694e-4745.02Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CAMJ85.694e-4742.17Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_BUCBP5.694e-4742.02Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionC02026C09SK IF1 Citrus clementina cDNA clone C02026C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290704 ID=CX290704; Name=CX290704; organism=Citrus clementina; type=EST; length=706bp
GGAAACTGTTGTCATCCATGCAATAGGGGCAGGACAACTGTTTGTGTTTC
AAGTCAAGTGGGATGCGCTATGAATTGTCAGTTCTGCTACACTGGCAGGA
TGGGTCTGAAGAGGCATCTGACTGCAGCTGAGATTGTAGAACAAGCAGTA
TTTGCTCGGCGTCTGCTCTCGAGTGAAGTTGGCTCGATTACAAATGTTGT
ATTTATGGGAATGGGAGAGCCACTTCACAAGGTTGAAAATGTTATAAAAG
CTGCCAACATAATGGTGCATGAACAGGGTCTTCACTTCAGTCCTCGCAAG
GTCACTGTTTCTACAAGTGGGCTTGTTCCCCAGCTGAAACAATTTCTCAA
TGAATCTAATTGTGCTTTAGCTGTTAGTTTAAACGCTACAACTGATGAGG
TCAGAAACTGGATCATGCCGATTAATCGGAAGTATAAACTAGGACTGCTT
ATTGAGACTCTTCGGGAGGAACTTCACTTCAAAAATAATTACAAAGTTCT
CTTTGAATACGTAATGCTTGCCGGAGTTAATGACAGCTTTGATGATGCAA
AGAGGCTTATTGGTCTTGTTCAGGGCATTCCATGCAAGATCAATCTCATT
TCCTTCAATCCTCATTGTGGATCACAGTTTACACCAACCACCGATGAGAA
AATGATTGAGTTTCGGAATATTTTGGCCGGGGCTGGGTGCACTGTTTTCT
TGCGTC
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