CX290704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BART1 (Ribosomal RNA large subunit methyltransferase N OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rlmN PE=3 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47 Identity = 106/234 (45.30%), Postives = 142/234 (60.68%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--------------EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L E +TN+V MGMGEPL+ E V KA I GL S R++T+STSG+VP + + E LA+SL+A D VR+ ++PIN+KY L LL++ R N ++ FEYVML +NDS DDAKRLI L++GIP KINLI FNP GS + + E++ F +++ AG Sbjct: 134 GRGTLCLSSQVGCTLTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPVEGRKVTNIVMMGMGEPLYNYEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLHAVHDTVRDMLVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAG 367
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHOP5 (Ribosomal RNA large subunit methyltransferase N OS=Rhodopseudomonas palustris (strain BisA53) GN=rlmN PE=3 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47 Identity = 105/240 (43.75%), Postives = 148/240 (61.67%), Query Frame = 1 Query: 7 CCHPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SSEVGS----ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 C + R T+CVSSQVGC +NC FC+TG L R+LTA EIV Q + A+ L + + G ITNVV MGMGEPL+ E V A I+ +G+ S R++T+STSG+VP + + +E LA+SL+A DE+RN ++P+N+KY L L++ R+ N ++ FEYVML GVNDS DDAK L+ L++G+P KINLI FNP GS + + +++ +F + AG Sbjct: 122 CVYIPETDRGTLCVSSQVGCTLNCSFCHTGTQKLVRNLTAGEIVGQVMVAKDRLGDWPMAVASTQDAGENNRLITNVVMMGMGEPLYNFEAVRDALLIVSDNEGIGLSRRRITLSTSGVVPNIFRTGDEIGVMLAISLHAVRDELRNELVPLNKKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKGVPAKINLIPFNPWPGSAYQCSDWDQIEKFSEYIFNAG 361
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHIME (Ribosomal RNA large subunit methyltransferase N OS=Rhizobium meliloti GN=rlmN PE=3 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47 Identity = 102/234 (43.59%), Postives = 144/234 (61.54%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR ++ +E ITN+V MGMGEPL+ ENV A I GL S R++T+STSG+VP++ + E LA+SL+A D++R+ ++PIN+KY L L+E R N ++ FEYVML VNDS +DAK L+ L++GIP KINLI FNP G+ + + E++ +F + + AG Sbjct: 132 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILSQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVMMGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLHAVRDDLRDMLVPINKKYPLKQLMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAG 365
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_ACICJ (Ribosomal RNA large subunit methyltransferase N OS=Acidiphilium cryptum (strain JF-5) GN=rlmN PE=3 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47 Identity = 103/226 (45.58%), Postives = 143/226 (63.27%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---SEVGS----ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 R VC+SSQVGC ++C+FC+TG L R+L+AAEIV Q + R S G ++ +V MGMGEPL+ ENV KA I++ +G+ S R++T+STSG+VP + + E LAVSL+A TD+VR+ I+P+NRKY + LI R N ++ FEYVML G+NDS DA+RL+ L+ GIP K+NLI FNP GS + ++ + F NI+ AG Sbjct: 137 RGAVCLSSQVGCTLSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKGETPRLLSTIVLMGMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSLHAVTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLVELIDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAG 362
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_SINMW (Ribosomal RNA large subunit methyltransferase N OS=Sinorhizobium medicae (strain WSM419) GN=rlmN PE=3 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47 Identity = 103/234 (44.02%), Postives = 144/234 (61.54%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR ++ +E ITNVV MGMGEPL+ ENV A I GL S R++T+STSG+VP++ + E LA+SL+A D++R+ ++PIN+KY L L+E R N ++ FEYVML VNDS +DAK L+ L++GIP KINLI FNP G+ + + E++ +F + + AG Sbjct: 134 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPDRDTPQGAIVPAEGRKITNVVMMGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLHAVRDDLRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAG 367
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BRUSU (Ribosomal RNA large subunit methyltransferase N OS=Brucella suis GN=rlmN PE=3 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47 Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+C+SSQVGC + C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V MGMGEPL+ E V KA I G S R++T+STSG+VP++ + +E LA+SL+A DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS DDAK L+ L+QGIP KINLI FNP G+ + + E++ +F + + AG Sbjct: 133 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALLIASDGDGPSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHAVRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAG 366
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_NITHX (Ribosomal RNA large subunit methyltransferase N OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rlmN PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47 Identity = 102/235 (43.40%), Postives = 145/235 (61.70%), Query Frame = 1 Query: 7 CCHPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 C + R T+CVSSQVGC +NC FC+TG L R+LTA EIV Q + AR L+ +TN+V MGMGEPL+ + V A I+ +G+ S R++T+STSG+VP + + E LA+SL+A DE+RN ++P+NRKY + L++ R+ N ++ FEYVML GVNDS DDAK L+ L++GI KINLI FNP G+++ + E++ +F + AG Sbjct: 121 CVYIPETDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRETPHGNRLVTNIVMMGMGEPLYNFDAVRDALLIVADNEGIGISKRRITLSTSGVVPNIVRTGEEIGVMLAISLHAVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDAKLLVKLLKGIHAKINLIPFNPWPGTRYECSDWEQIEKFSEYVFNAG 355
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_MAGSA (Ribosomal RNA large subunit methyltransferase N OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rlmN PE=3 SV=2) HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47 Identity = 104/231 (45.02%), Postives = 145/231 (62.77%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVG-SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R VC+S+QVGC + C+FC+TG L R+L+AAEIV Q + AR + G ++N+V MGMGEPL+ ENV A I + +G+ S R++T+STSG+VP +K+ LAVSL+A TDE+R+ IMPIN+KY L L++ RE N ++ FEY+ML G+NDS DA+ L+ LV+G+P K NLI FNP GS+F + F +IL AG + +R Sbjct: 186 RGAVCISTQVGCTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDDGGRQLSNIVVMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSLHAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALLKLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIR 416
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_CAMJ8 (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rlmN PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47 Identity = 97/230 (42.17%), Postives = 145/230 (63.04%), Query Frame = 1 Query: 22 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 + R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++ + N+V+MGMGEPL ++NV KA I+ GL SPR+ T+STSGL Q+K+ L + N LA+SL+A D +R +MPIN+ Y + +++ +R E +V+FEY+++ G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T +R Sbjct: 108 SHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE-LGQMNLGVLLAISLHAVNDGLRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIR 335
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BUCBP (Ribosomal RNA large subunit methyltransferase N OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rlmN PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47 Identity = 100/238 (42.02%), Postives = 151/238 (63.45%), Query Frame = 1 Query: 10 CHPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK--VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 C P N+ RTT+C+SSQ+GC++ C FC TG+ G ++L +EI+ Q + ++L+ ITNVV MGMGEPL + NV+ A IM+ E GL+ S +T+ST+G+VP LK+ + +LAVSL+A+ + +RN +MPIN+KY + ++ +++ L++ N K V EYVML+G+ND+ A+ L L++ IP KINLI +N GS + + D + F NIL GC V +R Sbjct: 107 CIPKNQ-RTTLCISSQLGCSLACSFCLTGQQGFNKNLNVSEIIGQVWYIQKLIYFSKINITNKITNVVLMGMGEPLLNLSNVVHALRIMLDEFGLNMSKNHITLSTAGIVPALKKLHTMIDVSLAVSLHASNNTIRNQLMPINKKYNIESVLCAIKKYLYYSNANKKRVTIEYVMLSGINDAAYHAEELFNLLKSIPHKINLIPWNHFSGSNYICSNDITINNFANILIKKGCIVTIR 343 The following BLAST results are available for this feature:
BLAST of CX290704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290704 ID=CX290704; Name=CX290704; organism=Citrus clementina; type=EST; length=706bpback to top |