CX290704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BRUAB (Ribosomal RNA large subunit methyltransferase N OS=Brucella abortus GN=rlmN PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47 Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+C+SSQVGC + C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V MGMGEPL+ E V KA I GL S ++T+STSG+VP++ + +E LA+SL+A DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS DDAK L+ L+QGIP KINLI FNP G+ + + E++ +F + + AG Sbjct: 133 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHAVRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAG 366
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BRUA2 (Ribosomal RNA large subunit methyltransferase N OS=Brucella abortus (strain 2308) GN=rlmN PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47 Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+C+SSQVGC + C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V MGMGEPL+ E V KA I GL S ++T+STSG+VP++ + +E LA+SL+A DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS DDAK L+ L+QGIP KINLI FNP G+ + + E++ +F + + AG Sbjct: 133 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHAVRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAG 366
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BRUA1 (Ribosomal RNA large subunit methyltransferase N OS=Brucella abortus (strain S19) GN=rlmN PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47 Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+C+SSQVGC + C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V MGMGEPL+ E V KA I GL S ++T+STSG+VP++ + +E LA+SL+A DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS DDAK L+ L+QGIP KINLI FNP G+ + + E++ +F + + AG Sbjct: 133 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHAVRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAG 366
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_XANP2 (Ribosomal RNA large subunit methyltransferase N OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rlmN PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47 Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS---------------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 R T+CVSSQVGC +NC FC+TG L R+LTAAEIV Q + AR L G +TN+VFMGMGEPL+ ++V +A + GL R++TVSTSG+VP++++ E LA+SL+A D++R+ ++PIN+KY + L+E R N ++ FEYVML GVNDS DA+ L+ L++G+P KINLI FNP G+Q+ + E + F +I+ AG Sbjct: 138 RGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGRDRATGPGLPTEGDRLVTNIVFMGMGEPLYAYDSVKEAIETLSDGDGLGLGKRRITVSTSGVVPEIERLGAEVGPMLAISLHAVRDKLRDELVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVKLLEGVPAKINLIPFNPWPGTQYECSDWETIERFSDIVFRAG 371
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_NITEC (Ribosomal RNA large subunit methyltransferase N OS=Nitrosomonas eutropha (strain C91) GN=rlmN PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47 Identity = 107/247 (43.32%), Postives = 143/247 (57.89%), Query Frame = 1 Query: 22 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------------------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 NRG T+CVSSQVGCA+ C FC TGR G R+L+ AEI+ Q +A RLL +VG +TNVV MGMGEPL ENV+ A ++M+ + S R+VTVSTSGLVP L + ALAVSL+A D +R+ ++PIN+KY + L+ L + FEYVML VNDS A+ L+ +V+ IPCK+NLI FN GS + + + + FR++L AG +R Sbjct: 98 NRG--TLCVSSQVGCALACSFCSTGRQGFNRNLSVAEIIGQLWWANRLLEGQVGELFSPDVAQIRADNTDTRRPVTNVVMMGMGEPLANFENVVTALDLMLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPIRDLLAACERYLPAAPRDFITFEYVMLRDVNDSIALARELVQVVRNIPCKLNLIPFNTFAGSGYERSNTDAIDNFRDVLMQAGIVTTVR 342
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATO (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rlmN PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47 Identity = 97/232 (41.81%), Postives = 144/232 (62.07%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 GR T+CVSSQ+GC +NC FC TG+ G R+L+AAE++ Q A R LS G ++TN+V MGMGEPL ENV+ A +IM+ + S RKVT+STSG+VP++ L +S +LAVSL+ D +RN I+PIN+KY + L+E + + + FEY ++ VND+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R Sbjct: 101 GRGTLCVSSQIGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHTPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATH (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rlmN PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47 Identity = 97/232 (41.81%), Postives = 144/232 (62.07%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 GR T+CVSSQ+GC +NC FC TG+ G R+L+AAE++ Q A R LS G ++TN+V MGMGEPL ENV+ A +IM+ + S RKVT+STSG+VP++ L +S +LAVSL+ D +RN I+PIN+KY + L+E + + + FEY ++ VND+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R Sbjct: 101 GRGTLCVSSQIGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHTPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATF (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rlmN PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47 Identity = 97/232 (41.81%), Postives = 144/232 (62.07%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 GR T+CVSSQ+GC +NC FC TG+ G R+L+AAE++ Q A R LS G ++TN+V MGMGEPL ENV+ A +IM+ + S RKVT+STSG+VP++ L +S +LAVSL+ D +RN I+PIN+KY + L+E + + + FEY ++ VND+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R Sbjct: 101 GRGTLCVSSQIGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHTPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHISN (Ribosomal RNA large subunit methyltransferase N OS=Rhizobium sp. (strain NGR234) GN=rlmN PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.268e-46 Identity = 102/234 (43.59%), Postives = 142/234 (60.68%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR ++ +E ITN+V MGMGEPL+ +NV A I GL S R++T+STSG+VP++ + E LA+SL+A DE+R+ ++PIN+KY L L+E R N ++ FEYVML VNDS DAK L+ L++GIP KINLI FNP G+ + + E++ F + + AG Sbjct: 132 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVMMGMGEPLYNFDNVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLHAVNDELRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLQDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQIEAFADFINQAG 365
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_CAUSK (Ribosomal RNA large subunit methyltransferase N OS=Caulobacter sp. (strain K31) GN=rlmN PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.268e-46 Identity = 102/221 (46.15%), Postives = 144/221 (65.16%), Query Frame = 1 Query: 40 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 +CVSSQVGC +NC FC+TG L R+LTAAEIV Q A+ L+ E ++N+VFMGMGEPL+ + +V A I+ +G+ S R++TVSTSG+VPQL+ +++ LA+SL+AT D +R+ ++P+N+KY L L+ +R N +V FEYVML GVNDS D+A+ L+ L++GIP KINLI FNP G+ + + + F IL AG Sbjct: 132 LCVSSQVGCTLNCSFCHTGTQALVRNLTAAEIVAQVQIAKDDLAEWPSDKEDRLLSNIVFMGMGEPLYNLGHVADAIEIISDNEGIGISRRRITVSTSGVVPQLEALGDKTQAMLAISLHATNDALRDVLVPLNKKYPLEDLMAGVRAYPGLSNARRVTFEYVMLKGVNDSPDEARALVKLIKGIPAKINLIPFNPWPGTDYVCSDWAAIEAFGAILNKAG 352 The following BLAST results are available for this feature:
BLAST of CX290704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290704 ID=CX290704; Name=CX290704; organism=Citrus clementina; type=EST; length=706bpback to top |