CX290704

Overview
NameCX290704
Unique NameCX290704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BRUAB (Ribosomal RNA large subunit methyltransferase N OS=Brucella abortus GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+C+SSQVGC + C FC+TG   L R+LT+ EI+ Q + AR               ++ +E   ITN+V MGMGEPL+  E V KA  I     GL  S  ++T+STSG+VP++ +  +E    LA+SL+A  DE+R+ ++PIN+KY L  LI+  RE     N  ++ FEYVML  +NDS DDAK L+ L+QGIP KINLI FNP  G+ +  +  E++ +F + +  AG
Sbjct:  133 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHAVRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAG 366          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BRUA2 (Ribosomal RNA large subunit methyltransferase N OS=Brucella abortus (strain 2308) GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+C+SSQVGC + C FC+TG   L R+LT+ EI+ Q + AR               ++ +E   ITN+V MGMGEPL+  E V KA  I     GL  S  ++T+STSG+VP++ +  +E    LA+SL+A  DE+R+ ++PIN+KY L  LI+  RE     N  ++ FEYVML  +NDS DDAK L+ L+QGIP KINLI FNP  G+ +  +  E++ +F + +  AG
Sbjct:  133 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHAVRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAG 366          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_BRUA1 (Ribosomal RNA large subunit methyltransferase N OS=Brucella abortus (strain S19) GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+C+SSQVGC + C FC+TG   L R+LT+ EI+ Q + AR               ++ +E   ITN+V MGMGEPL+  E V KA  I     GL  S  ++T+STSG+VP++ +  +E    LA+SL+A  DE+R+ ++PIN+KY L  LI+  RE     N  ++ FEYVML  +NDS DDAK L+ L+QGIP KINLI FNP  G+ +  +  E++ +F + +  AG
Sbjct:  133 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHAVRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAG 366          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_XANP2 (Ribosomal RNA large subunit methyltransferase N OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47
Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS---------------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            R T+CVSSQVGC +NC FC+TG   L R+LTAAEIV Q + AR  L    G                +TN+VFMGMGEPL+  ++V +A   +    GL    R++TVSTSG+VP++++   E    LA+SL+A  D++R+ ++PIN+KY +  L+E  R      N  ++ FEYVML GVNDS  DA+ L+ L++G+P KINLI FNP  G+Q+  +  E +  F +I+  AG
Sbjct:  138 RGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGRDRATGPGLPTEGDRLVTNIVFMGMGEPLYAYDSVKEAIETLSDGDGLGLGKRRITVSTSGVVPEIERLGAEVGPMLAISLHAVRDKLRDELVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVKLLEGVPAKINLIPFNPWPGTQYECSDWETIERFSDIVFRAG 371          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_NITEC (Ribosomal RNA large subunit methyltransferase N OS=Nitrosomonas eutropha (strain C91) GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47
Identity = 107/247 (43.32%), Postives = 143/247 (57.89%), Query Frame = 1
Query:   22 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------------------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            NRG  T+CVSSQVGCA+ C FC TGR G  R+L+ AEI+ Q  +A RLL  +VG                    +TNVV MGMGEPL   ENV+ A ++M+ +     S R+VTVSTSGLVP L +       ALAVSL+A  D +R+ ++PIN+KY +  L+      L       + FEYVML  VNDS   A+ L+ +V+ IPCK+NLI FN   GS +  +  + +  FR++L  AG    +R
Sbjct:   98 NRG--TLCVSSQVGCALACSFCSTGRQGFNRNLSVAEIIGQLWWANRLLEGQVGELFSPDVAQIRADNTDTRRPVTNVVMMGMGEPLANFENVVTALDLMLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPIRDLLAACERYLPAAPRDFITFEYVMLRDVNDSIALARELVQVVRNIPCKLNLIPFNTFAGSGYERSNTDAIDNFRDVLMQAGIVTTVR 342          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATO (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47
Identity = 97/232 (41.81%), Postives = 144/232 (62.07%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            GR T+CVSSQ+GC +NC FC TG+ G  R+L+AAE++ Q   A R LS   G    ++TN+V MGMGEPL   ENV+ A +IM+ +     S RKVT+STSG+VP++   L +S  +LAVSL+   D +RN I+PIN+KY +  L+E  +       +  + FEY ++  VND+  DA+ L+ L++   +P KINLI FNP+ G+ +   ++ ++  F+  L   G    +R
Sbjct:  101 GRGTLCVSSQIGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHTPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATH (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47
Identity = 97/232 (41.81%), Postives = 144/232 (62.07%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            GR T+CVSSQ+GC +NC FC TG+ G  R+L+AAE++ Q   A R LS   G    ++TN+V MGMGEPL   ENV+ A +IM+ +     S RKVT+STSG+VP++   L +S  +LAVSL+   D +RN I+PIN+KY +  L+E  +       +  + FEY ++  VND+  DA+ L+ L++   +P KINLI FNP+ G+ +   ++ ++  F+  L   G    +R
Sbjct:  101 GRGTLCVSSQIGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHTPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_FRATF (Ribosomal RNA large subunit methyltransferase N OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rlmN PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47
Identity = 97/232 (41.81%), Postives = 144/232 (62.07%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            GR T+CVSSQ+GC +NC FC TG+ G  R+L+AAE++ Q   A R LS   G    ++TN+V MGMGEPL   ENV+ A +IM+ +     S RKVT+STSG+VP++   L +S  +LAVSL+   D +RN I+PIN+KY +  L+E  +       +  + FEY ++  VND+  DA+ L+ L++   +P KINLI FNP+ G+ +   ++ ++  F+  L   G    +R
Sbjct:  101 GRGTLCVSSQIGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHTPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVR 332          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHISN (Ribosomal RNA large subunit methyltransferase N OS=Rhizobium sp. (strain NGR234) GN=rlmN PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.268e-46
Identity = 102/234 (43.59%), Postives = 142/234 (60.68%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+C+SSQVGC + C FC+TG   L R+LTA EI+ Q + AR               ++ +E   ITN+V MGMGEPL+  +NV  A  I     GL  S R++T+STSG+VP++ +   E    LA+SL+A  DE+R+ ++PIN+KY L  L+E  R      N  ++ FEYVML  VNDS  DAK L+ L++GIP KINLI FNP  G+ +  +  E++  F + +  AG
Sbjct:  132 GRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVMMGMGEPLYNFDNVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLHAVNDELRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLQDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQIEAFADFINQAG 365          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_CAUSK (Ribosomal RNA large subunit methyltransferase N OS=Caulobacter sp. (strain K31) GN=rlmN PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.268e-46
Identity = 102/221 (46.15%), Postives = 144/221 (65.16%), Query Frame = 1
Query:   40 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            +CVSSQVGC +NC FC+TG   L R+LTAAEIV Q   A+  L+      E   ++N+VFMGMGEPL+ + +V  A  I+   +G+  S R++TVSTSG+VPQL+   +++   LA+SL+AT D +R+ ++P+N+KY L  L+  +R      N  +V FEYVML GVNDS D+A+ L+ L++GIP KINLI FNP  G+ +  +    +  F  IL  AG
Sbjct:  132 LCVSSQVGCTLNCSFCHTGTQALVRNLTAAEIVAQVQIAKDDLAEWPSDKEDRLLSNIVFMGMGEPLYNLGHVADAIEIISDNEGIGISRRRITVSTSGVVPQLEALGDKTQAMLAISLHATNDALRDVLVPLNKKYPLEDLMAGVRAYPGLSNARRVTFEYVMLKGVNDSPDEARALVKLIKGIPAKINLIPFNPWPGTDYVCSDWAAIEAFGAILNKAG 352          
The following BLAST results are available for this feature:
BLAST of CX290704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_BRUAB5.694e-4744.02Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_BRUA25.694e-4744.02Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_BRUA15.694e-4744.02Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_XANP27.436e-4744.02Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_NITEC7.436e-4743.32Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_FRATO7.436e-4741.81Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_FRATH7.436e-4741.81Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_FRATF7.436e-4741.81Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RHISN1.268e-4643.59Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CAUSK1.268e-4646.15Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionC02026C09SK IF1 Citrus clementina cDNA clone C02026C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290704 ID=CX290704; Name=CX290704; organism=Citrus clementina; type=EST; length=706bp
GGAAACTGTTGTCATCCATGCAATAGGGGCAGGACAACTGTTTGTGTTTC
AAGTCAAGTGGGATGCGCTATGAATTGTCAGTTCTGCTACACTGGCAGGA
TGGGTCTGAAGAGGCATCTGACTGCAGCTGAGATTGTAGAACAAGCAGTA
TTTGCTCGGCGTCTGCTCTCGAGTGAAGTTGGCTCGATTACAAATGTTGT
ATTTATGGGAATGGGAGAGCCACTTCACAAGGTTGAAAATGTTATAAAAG
CTGCCAACATAATGGTGCATGAACAGGGTCTTCACTTCAGTCCTCGCAAG
GTCACTGTTTCTACAAGTGGGCTTGTTCCCCAGCTGAAACAATTTCTCAA
TGAATCTAATTGTGCTTTAGCTGTTAGTTTAAACGCTACAACTGATGAGG
TCAGAAACTGGATCATGCCGATTAATCGGAAGTATAAACTAGGACTGCTT
ATTGAGACTCTTCGGGAGGAACTTCACTTCAAAAATAATTACAAAGTTCT
CTTTGAATACGTAATGCTTGCCGGAGTTAATGACAGCTTTGATGATGCAA
AGAGGCTTATTGGTCTTGTTCAGGGCATTCCATGCAAGATCAATCTCATT
TCCTTCAATCCTCATTGTGGATCACAGTTTACACCAACCACCGATGAGAA
AATGATTGAGTTTCGGAATATTTTGGCCGGGGCTGGGTGCACTGTTTTCT
TGCGTC
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