CX290730

Overview
NameCX290730
Unique NameCX290730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_VIBVU (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus GN=fadJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.328e-14
Identity = 46/145 (31.72%), Postives = 73/145 (50.34%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            +  ++  D R G  + KGFY Y  ++K     EV K + K      + + P+ +KLS+ DI      P++NEA     +GI     D DI ++ G+GFP + GG   + D  G K +  ++ +++  YG+ F PC  L  RA  G
Sbjct:  566 VFDVLLNDGRKGRKSGKGFYTYKGKKK-----EVDKSVYKL-----LKLTPE-SKLSDNDIALRCVLPMLNEAVRCLDDGIIRSPRDGDIGAIFGIGFPPFLGGPFRYMDQFGLKELVEKMNQFAEKYGDRFAPCDGLLTRAGEG 699          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_KLEP3 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae (strain 342) GN=fadJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.346e-14
Identity = 49/150 (32.67%), Postives = 74/150 (49.33%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKAS---PDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGAT 455
            II  + +D R G    +GFYLY+ + + S   PDP V   +   R  S         +LS + + E     ++NEA   F E I   A D DI +V G+GFP + GG   + D++G+  + + L+  ++ YG  F PC  L   A +G T
Sbjct:  565 IIDAILKDDRKGRKNNRGFYLYETKGRKSKKRPDPAVYPLLGIDRPQS---------RLSAQQVAERCVMMMLNEAARCFDEQIIRSARDGDIGAVFGIGFPPFLGGPFRYMDTIGAGEVAAILQRLAAQYGPRFTPCDTLLRMAEQGTT 705          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_AERHH (Fatty acid oxidation complex subunit alpha OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.346e-14
Identity = 49/147 (33.33%), Postives = 77/147 (52.38%), Query Frame = 3
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKD-IVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGAT 455
            I +M E  R G+   KGFY Y++ +K  P     K +  A S   +A   K  +  +KD I+  +  P++NE  L   EGI    A+ DIA V G+GFP +RGG+  + D++G     +  ++++ L G  ++    L E AA+G T
Sbjct:  573 IDVMYEVNRFGQKNGKGFYAYEQDKKGKP-----KKVADAASYELLAPIAKPKQDFDKDAIIARMMIPMINEVVLCLEEGIVATPAEADIALVYGLGFPPFRGGVFRYLDTIGLDRYVAMADQYADL-GPLYRVSDKLREMAAQGKT 713          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SHEAM (Fatty acid oxidation complex subunit alpha OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.677e-14
Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = 3
Query:   27 MQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGV--AINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGAT 455
            +  D R G    KGFYLY +  K       KK  E   S+ G+  A   +  +++E+ +V+M+     NEA     EGI     D DI ++ G+GFP + GG   + D+LG+  +   LE + S YG+ F P A L   AA G T
Sbjct:  570 LMADDRKGRKNGKGFYLYGKAAKKG-----KKVDESVYSLLGLTPATGKEAGEIAERCVVQML-----NEAVRCLEEGIIASPRDGDIGAIFGIGFPPFLGGPFRYMDTLGAAKMVRLLEGYQSKYGDRFAPAALLKAMAAEGKT 704          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_KLEP7 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 48/150 (32.00%), Postives = 74/150 (49.33%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKAS---PDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGAT 455
            II  + +D R G    +GFYLY+ + + S   PDP V   +   R  S         +LS + + E     ++NEA   F E I   A D DI +V G+GFP + GG   + D++G+  + + L+  ++ +G  F PC  L   A +G T
Sbjct:  565 IIDAILKDDRKGRKNNRGFYLYETKGRKSKKRPDPAVYPLLGIGRPQS---------RLSAQQVAERCVMMMLNEAARCFDEQIIRSARDGDIGAVFGIGFPPFLGGPFRYMDTIGAGEVAAILQRLAAQFGPRFTPCDTLLRMAEQGTT 705          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_AERS4 (Fatty acid oxidation complex subunit alpha OS=Aeromonas salmonicida (strain A449) GN=fadB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 45/146 (30.82%), Postives = 73/146 (50.00%), Query Frame = 3
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGAT 455
            I +M +  R G+   KGFY Y++ +K  P    KK  + A       I        ++ I+  +  P++NE  L   EGI    A+ DIA V G+GFP +RGG+  + D++G     +  ++++ L G  ++    L E AA+G T
Sbjct:  573 IDVMYDASRFGQKNGKGFYAYEQDKKGKP----KKVADVAAYELLAPIAKPKQDFDKEAIIAGMMIPMINEVVLCLEEGIVATPAEADIALVYGLGFPPFRGGVFRYLDTIGLDRYVAMADQYADL-GPLYRVSDRLREMAAQGKT 713          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SHESM (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 3
Query:   36 DKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGV-----AINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAA 443
            D R G    KGFY Y    KA   P  KK +++  S+ GV      I+ + + ++E+ +V+M+     NEA     +GI     D DI ++ G+GFP + GG   + D+LG+  +   LE + + YG+ F+PC  L E AA
Sbjct:  573 DDRKGRKNGKGFYQYAAGNKA---PSKKKAVDE--SVYGVLGIKPGIDKEMSAVAERCVVQML-----NEAVRCLDDGIIASPRDGDIGAIFGIGFPPFLGGPFHYIDTLGADNLVKILERYQAQYGDRFEPCPRLKEMAA 703          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_PSEU5 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas stutzeri (strain A1501) GN=fadB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 43/144 (29.86%), Postives = 73/144 (50.69%), Query Frame = 3
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            + +M +  R G+   KGFY Y+  +K  P    KK ++         I  +  +LS++DI+  +  P+  E      +GI   AA+ D+  + G+GFP +RGG + + DS+G     +  ++++ L G  + P A L E AA G
Sbjct:  572 VDVMYDANRLGQKNGKGFYAYEMDKKGKP----KKVVDPQAYELLKPIVAETRELSDEDIINYMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVAMADKYADL-GPLYHPTAKLREMAANG 710          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SHESR (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-7) GN=fadJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 46/138 (33.33%), Postives = 71/138 (51.45%), Query Frame = 3
Query:   36 DKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGV--AINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAA 443
            D R G    KGFY Y    KAS   +V    E    + G+   I+ + + ++E+ +V+M+     NEA     +GI     D DI ++ G+GFP + GG   + D+LG+  +   LE + + YG+ F+PC  L E AA
Sbjct:  573 DDRKGRKNGKGFYQYAAGNKASSKKKVVD--ESVYGVLGIKPGIDKEMSAVAERCVVQML-----NEAVRCLDDGIIASPRDGDIGAIFGIGFPPFLGGPFHYIDTLGADNLVKILERYQAQYGDRFEPCPRLKEMAA 703          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_PSEMY (Fatty acid oxidation complex subunit alpha OS=Pseudomonas mendocina (strain ymp) GN=fadB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 42/148 (28.38%), Postives = 77/148 (52.03%), Query Frame = 3
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASP----DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            + +M E  R G+   KGFY Y+  ++  P    DPE  + ++        +I  +  +++++DI+  +  P+  E      +GI   AA+ D+  + G+GFP +RGG + + DS+G     +  ++++ L G  + P A L E AA+G
Sbjct:  572 VDVMYEANRLGQKNGKGFYAYETDKRGKPKKVSDPEAYELLK--------SIVVEEREVTDEDIINFMMIPLCLETVRCLEDGIVDTAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALADKYADL-GALYHPTAKLREMAAKG 710          
The following BLAST results are available for this feature:
BLAST of CX290730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
FADJ_VIBVU3.328e-1431.72Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_KLEP34.346e-1432.67Fatty acid oxidation complex subunit alpha OS=Kleb... [more]
FADB_AERHH4.346e-1433.33Fatty acid oxidation complex subunit alpha OS=Aero... [more]
FADJ_SHEAM5.677e-1434.48Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_KLEP77.414e-1432.00Fatty acid oxidation complex subunit alpha OS=Kleb... [more]
FADB_AERS42.817e-1330.82Fatty acid oxidation complex subunit alpha OS=Aero... [more]
FADJ_SHESM4.806e-1334.04Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_PSEU54.806e-1329.86Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADJ_SHESR6.276e-1333.33Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_PSEMY8.197e-1328.38Fatty acid oxidation complex subunit alpha OS=Pseu... [more]

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Properties
Property NameValue
Genbank descriptionC02026E12SK IF1 Citrus clementina cDNA clone C02026E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290730 ID=CX290730; Name=CX290730; organism=Citrus clementina; type=EST; length=670bp
ACCTATAATCAATGATTATCCCAATTATGCAAGAGGATAAGAGAGCAGGT
GAAACCACTCGCAAAGGTTTCTATTTGTATGATGAGAGACGAAAAGCTAG
CCCAGATCCTGAAGTAAAGAAATTCATTGAGAAGGCTAGGAGCATGTCTG
GTGTTGCCATTAACCCTAAGTTTGCAAAATTATCTGAGAAGGATATTGTG
GAGATGATATTCTTTCCGGTGGTGAATGAGGCCTGTCTTGTCTTTGCTGA
AGGTATTGCAGTCAAGGCAGCTGACCTTGACATTGCGTCTGTTATGGGCA
TGGGTTTTCCAGTTTACAGGGGAGGAATCATGTTCTGGGCCGACTCTCTT
GGATCGAAGTACATTTACTCACGATTGGAGGAATGGTCAAGCTTGTACGG
AGAATTTTTTAAGCCATGTGCTTTCTTGGCTGAAAGAGCTGCCAGGGGAG
CTACTCTGAGTGCTCCGGTGGAACAAGCCAAGTCTAAATTATAAGATAAA
ACTTTGCTTTGTTTGTTGGTTGTTGAACTTAGGGAACAATTTCAGAACAT
TTTTCTTTCTGCTGTGCTGCTTTCTCTTTTCAATTCCCAGATGAGATATG
CTCGGCAGGATCCAAATAATTTATGTGATAATAAATTATGTTATATAAAA
AAAAAAAAAAAAAAAAAAAA
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