CX290730

Overview
NameCX290730
Unique NameCX290730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_YERPA (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.398e-12
Identity = 39/139 (28.06%), Postives = 70/139 (50.36%), Query Frame = 3
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAE 434
            + +M +++R G+   +GFY Y +  K  P  E  + ++K  +     I+    + S++DI+     P++NE      EGI   AA+ D+A V G+GFP + GG+  + D+LGS       + ++ L   +  P    A+
Sbjct:  572 VDVMFDNQRFGQKNGQGFYRYTQDAKGKPRKENDEQVDKLLA----EISQPLQEFSDEDIIARTMIPMINEVVRCLEEGIIASAAEGDMALVYGLGFPPFHGGVFRYLDTLGSANYVEMAQRYAHLGALYHVPAGLRAK 706          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_YERP3 (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.398e-12
Identity = 39/139 (28.06%), Postives = 70/139 (50.36%), Query Frame = 3
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAE 434
            + +M +++R G+   +GFY Y +  K  P  E  + ++K  +     I+    + S++DI+     P++NE      EGI   AA+ D+A V G+GFP + GG+  + D+LGS       + ++ L   +  P    A+
Sbjct:  572 VDVMFDNQRFGQKNGQGFYRYTQDAKGKPRKENDEQVDKLLA----EISQPLQEFSDEDIIARTMIPMINEVVRCLEEGIIASAAEGDMALVYGLGFPPFHGGVFRYLDTLGSANYVEMAQRYAHLGALYHVPAGLRAK 706          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SHEFN (Fatty acid oxidation complex subunit alpha OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3
Query:   36 DKRAGETTRKGFYLYDERRKASP--DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGA 452
            D R G    KGFY Y  + K +   D  V K ++       +A + +   ++E+  ++M+     NEA     EGI   A D DI ++ G+GFP + GG   + D+LG+  + + L+ + SLYG+ F PC  L + A+ G+
Sbjct:  575 DDRKGRKNGKGFYQYGPKAKKAKLVDESVYKVLDIL-----IASDKEAKGVAERCTIQML-----NEAVRCLEEGIIASARDGDIGAIFGIGFPPFLGGPFRYIDTLGASNLVATLQGYQSLYGDRFAPCDTLVKMASDGS 705          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: ECHA_HUMAN (Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens GN=HADHA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 44/134 (32.84%), Postives = 69/134 (51.49%), Query Frame = 3
Query:   48 GETTRKGFYLYDE---RRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERA 440
            G  + KGFY+Y E   R+  + D +          ++ + + PK    S++DI   +    VNEA +   EGI    A+ DI +V G+GFP   GG   + D  G++ I  RL+++ + YG+ F PC  LA+ A
Sbjct:  629 GRKSGKGFYIYQEGVKRKDLNSDMD--------SILASLKLPPKSEVSSDEDIQFRLVTRFVNEAVMCLQEGILATPAEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKIVDRLKKYEAAYGKQFTPCQLLADHA 754          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALTY (Fatty acid oxidation complex subunit alpha OS=Salmonella typhimurium GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALTI (Fatty acid oxidation complex subunit alpha OS=Salmonella typhi GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALPK (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A (strain AKU_12601) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALPB (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALPA (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALNS (Fatty acid oxidation complex subunit alpha OS=Salmonella newport (strain SL254) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
The following BLAST results are available for this feature:
BLAST of CX290730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
FADB_YERPA1.398e-1228.06Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERP31.398e-1228.06Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_SHEFN1.826e-1231.91Fatty acid oxidation complex subunit alpha OS=Shew... [more]
ECHA_HUMAN1.826e-1232.84Trifunctional enzyme subunit alpha, mitochondrial ... [more]
FADJ_SALTY2.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALTI2.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPK2.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPB2.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPA2.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALNS2.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]

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Properties
Property NameValue
Genbank descriptionC02026E12SK IF1 Citrus clementina cDNA clone C02026E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290730 ID=CX290730; Name=CX290730; organism=Citrus clementina; type=EST; length=670bp
ACCTATAATCAATGATTATCCCAATTATGCAAGAGGATAAGAGAGCAGGT
GAAACCACTCGCAAAGGTTTCTATTTGTATGATGAGAGACGAAAAGCTAG
CCCAGATCCTGAAGTAAAGAAATTCATTGAGAAGGCTAGGAGCATGTCTG
GTGTTGCCATTAACCCTAAGTTTGCAAAATTATCTGAGAAGGATATTGTG
GAGATGATATTCTTTCCGGTGGTGAATGAGGCCTGTCTTGTCTTTGCTGA
AGGTATTGCAGTCAAGGCAGCTGACCTTGACATTGCGTCTGTTATGGGCA
TGGGTTTTCCAGTTTACAGGGGAGGAATCATGTTCTGGGCCGACTCTCTT
GGATCGAAGTACATTTACTCACGATTGGAGGAATGGTCAAGCTTGTACGG
AGAATTTTTTAAGCCATGTGCTTTCTTGGCTGAAAGAGCTGCCAGGGGAG
CTACTCTGAGTGCTCCGGTGGAACAAGCCAAGTCTAAATTATAAGATAAA
ACTTTGCTTTGTTTGTTGGTTGTTGAACTTAGGGAACAATTTCAGAACAT
TTTTCTTTCTGCTGTGCTGCTTTCTCTTTTCAATTCCCAGATGAGATATG
CTCGGCAGGATCCAAATAATTTATGTGATAATAAATTATGTTATATAAAA
AAAAAAAAAAAAAAAAAAAA
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