CX290730

Overview
NameCX290730
Unique NameCX290730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALHS (Fatty acid oxidation complex subunit alpha OS=Salmonella heidelberg (strain SL476) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALG2 (Fatty acid oxidation complex subunit alpha OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALEP (Fatty acid oxidation complex subunit alpha OS=Salmonella enteritidis PT4 (strain P125109) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALDC (Fatty acid oxidation complex subunit alpha OS=Salmonella dublin (strain CT_02021853) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALCH (Fatty acid oxidation complex subunit alpha OS=Salmonella choleraesuis GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALA4 (Fatty acid oxidation complex subunit alpha OS=Salmonella agona (strain SL483) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_ENTS8 (Fatty acid oxidation complex subunit alpha OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 47/140 (33.57%), Postives = 70/140 (50.00%), Query Frame = 3
Query:   36 DKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGAT 455
            D R G    +GFYLY  + + S     KK ++ A  + G+       KLS ++I E     ++NEA     EG+   A D DI +V G+GFP + GG   + D+LG+  + + L   ++ YG+ F PC  L   A  G T
Sbjct:  572 DDRKGRKNGRGFYLYPAKGRKS-----KKQVDPA--VYGLIGVKPGGKLSGEEIAERCVMMMLNEAARCLDEGVVRSARDGDIGAVFGIGFPPFLGGPFRYMDTLGAAAMATTLTRLATRYGDRFTPCDRLLRMAQTGQT 704          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_PSEU2 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 45/148 (30.41%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASP----DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            I  + + KR G+   KGFY Y+  +K  P    DP V   ++         I  +  ++S++DIV  +  P+  E      +GI   AA+ D+  + G+GFP +RGG + + DS+G     +  ++++ L G  ++P A L E AA G
Sbjct:  572 IDALYDAKRLGQKNGKGFYAYETDKKGKPKKVNDPAVLDVLKP--------IVYEQREVSDEDIVNWMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALADQYAEL-GALYQPTAKLREMAANG 710          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_ENTS8 (Fatty acid oxidation complex subunit alpha OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 47/147 (31.97%), Postives = 69/147 (46.94%), Query Frame = 3
Query:   42 RAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGATLSAPVEQAK 482
            R G+   KGFY Y E  K  P       ++   S+      PK A  S+++IV  +  P+VNE      EGI    A+ D+A V G+GFP + GG   W D+ GS       + +  L G  ++  A L ++A+  A     VE A+
Sbjct:  580 RFGQKNGKGFYAYQEDSKGKPRKVPDDAVD---SLLAEVSQPKRA-FSDEEIVARMMIPMVNEVVRCLEEGIIASPAEADMALVYGLGFPPFHGGAFRWLDTQGSAKYLDMAQHYQHL-GPLYEAPAGLRDKASHNAPYYPQVEPAQ 721          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: ECHP_CAVPO (Peroxisomal bifunctional enzyme OS=Cavia porcellus GN=EHHADH PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 44/151 (29.14%), Postives = 80/151 (52.98%), Query Frame = 3
Query:    9 SMIIPIMQEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF--FKPCAFLAERAARG 449
            S I  ++ E  R G+ T +G+Y YD+   R   PDP + KF+ + R    +    K   +   +I+E   + ++NEA  +  EGIA     +D+  + G G+P ++GG MF+A S+G   +  +L+++     +    +PC +L + A++G
Sbjct:  562 SPIADMLCELGRFGQKTGQGWYKYDKPLGRIHKPDPWLSKFLSEYRETHHI----KPRVIGRDEILERCLYALINEAFRILGEGIAASPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYQQNPDIPHLEPCNYLKKLASQG 708          
The following BLAST results are available for this feature:
BLAST of CX290730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
FADJ_SALHS2.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALG22.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALEP2.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALDC2.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALCH2.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALA42.385e-1231.97Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_ENTS82.385e-1233.57Fatty acid oxidation complex subunit alpha OS=Ente... [more]
FADB_PSEU22.385e-1230.41Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_ENTS83.115e-1231.97Fatty acid oxidation complex subunit alpha OS=Ente... [more]
ECHP_CAVPO3.115e-1229.14Peroxisomal bifunctional enzyme OS=Cavia porcellus... [more]

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Properties
Property NameValue
Genbank descriptionC02026E12SK IF1 Citrus clementina cDNA clone C02026E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290730 ID=CX290730; Name=CX290730; organism=Citrus clementina; type=EST; length=670bp
ACCTATAATCAATGATTATCCCAATTATGCAAGAGGATAAGAGAGCAGGT
GAAACCACTCGCAAAGGTTTCTATTTGTATGATGAGAGACGAAAAGCTAG
CCCAGATCCTGAAGTAAAGAAATTCATTGAGAAGGCTAGGAGCATGTCTG
GTGTTGCCATTAACCCTAAGTTTGCAAAATTATCTGAGAAGGATATTGTG
GAGATGATATTCTTTCCGGTGGTGAATGAGGCCTGTCTTGTCTTTGCTGA
AGGTATTGCAGTCAAGGCAGCTGACCTTGACATTGCGTCTGTTATGGGCA
TGGGTTTTCCAGTTTACAGGGGAGGAATCATGTTCTGGGCCGACTCTCTT
GGATCGAAGTACATTTACTCACGATTGGAGGAATGGTCAAGCTTGTACGG
AGAATTTTTTAAGCCATGTGCTTTCTTGGCTGAAAGAGCTGCCAGGGGAG
CTACTCTGAGTGCTCCGGTGGAACAAGCCAAGTCTAAATTATAAGATAAA
ACTTTGCTTTGTTTGTTGGTTGTTGAACTTAGGGAACAATTTCAGAACAT
TTTTCTTTCTGCTGTGCTGCTTTCTCTTTTCAATTCCCAGATGAGATATG
CTCGGCAGGATCCAAATAATTTATGTGATAATAAATTATGTTATATAAAA
AAAAAAAAAAAAAAAAAAAA
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