CX290730

Overview
NameCX290730
Unique NameCX290730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SHESA (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain ANA-3) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 3
Query:   36 DKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGV--AINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGA 452
            D R G    KGFY Y    KAS   + K   E   ++ G+   ++   + ++E+ +V+M+     NEA     +GI     D DI ++ G+GFP + GG   + D+LG+  + + LE + + YG+ F+PC  L   AA  A
Sbjct:  573 DDRKGRKNGKGFYQYAAGNKASS--KKKAVDESVYAVLGIKPGMDKDLSAVAERCVVQML-----NEAVRCLDDGIIASPRDGDIGAIFGIGFPPFLGGPFHYIDTLGADNLVNILERYQAQYGDRFEPCPRLKAMAAEKA 706          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SHELP (Fatty acid oxidation complex subunit alpha OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 3
Query:   36 DKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGV-----AINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGA 452
            D R G    KGFY Y  + K       KK +++  S+ GV       + +   L+E+ +V+M+     NEA     EGI     D DI ++ G+GFP + GG   + DSLG+K++   L+ +   +G+ F PC  L E A  G+
Sbjct:  573 DDRKGRKNGKGFYQYGAKSK-------KKLVDE--SVYGVLGLTPGADGEPIALAERCVVQML-----NEAVRCLEEGIIASPRDGDIGAIFGIGFPPFLGGPFRYMDSLGAKHLVETLKRYQDQFGDRFAPCDRLVEMAESGS 702          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SALSV (Fatty acid oxidation complex subunit alpha OS=Salmonella schwarzengrund (strain CVM19633) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 46/147 (31.29%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAAR 446
            ++  +  D R G    +GFYLY E+ + S    DP + K I       GV      ++LS + + +     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG   + + L+  ++LYG  + PC  L   A R
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLI-------GVQGQ---SRLSAQQVADRCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLAALYGPRYAPCEQLVRMAER 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: ECHP_HUMAN (Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 43/146 (29.45%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   24 IMQEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF--FKPCAFLAERAARG 449
            ++ E  R G+ T KG+Y YD+   R   PDP + KF+ + R      I P+   +S+ +I+E   + ++NEA  +  EGIA     +D+  + G G+P ++GG MF+A ++G   +  +L+++     +    +P  +L + A++G
Sbjct:  564 VLCELGRFGQKTGKGWYQYDKPLGRIHKPDPWLSKFLSRYRKTHH--IEPR--TISQDEILERCLYSLINEAFRILGEGIAASPEHIDVVYLHGYGWPRHKGGPMFYASTVGLPTVLEKLQKYYRQNPDIPQLEPSDYLKKLASQG 705          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_CITK8 (Fatty acid oxidation complex subunit alpha OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 44/148 (29.73%), Postives = 70/148 (47.30%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYD---ERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            ++  +  D R G    +GFYLY     + K   DP + + I               ++LS + + E     ++NEA   F E +   A D DI +V G+GFP + GG   + D+LG+  + + L+  ++ YG+ F PC  L   A RG
Sbjct:  565 VVASILNDDRKGRKNGRGFYLYGVKGRKSKKQVDPAIYRLIGTQGQ----------SRLSAQQMAERCVMLMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDTLGAGEVVAVLQRLATQYGDRFTPCERLLRMAERG 702          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_PSESM (Fatty acid oxidation complex subunit alpha OS=Pseudomonas syringae pv. tomato GN=fadB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 43/148 (29.05%), Postives = 74/148 (50.00%), Query Frame = 3
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASP----DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            +  + E  R G+   KGFY+Y+  +K  P    DP V   ++         I  +  ++S++DI+  +  P+  E      +GI   AA+ D+  + G+GFP +RGG + + DS+G     +  + ++ L G  ++P A L E AA G
Sbjct:  572 VDALYEANRLGQKNGKGFYVYETDKKGKPKKVNDPAVLDVLKP--------IVYEQREVSDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALADRYAEL-GALYQPTAKLREMAANG 710          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_SHEHH (Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 44/140 (31.43%), Postives = 72/140 (51.43%), Query Frame = 3
Query:   36 DKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGV--AINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            D R G    KGFYLY  ++KA      K+  +   S+ G+   ++ +  +++++ +V+M+     NEA     E I     D DI ++ G+GFP + GG   + D+LG+  +   LE + S YG  F+P A L + A  G
Sbjct:  575 DDRKGRKNGKGFYLYGGKKKA------KEVDQTVYSVLGLKPGVDTEATEVAQRCVVQML-----NEAVRCLEESIIACPRDGDIGAIFGIGFPPFLGGPFHYIDTLGAANLVKILENYQSRYGSRFEPAAKLKQMAEEG 703          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: ECHA_MOUSE (Trifunctional enzyme subunit alpha, mitochondrial OS=Mus musculus GN=Hadha PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 43/132 (32.58%), Postives = 65/132 (49.24%), Query Frame = 3
Query:   48 GETTRKGFYLYDERRK-ASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERA 440
            G  + KGFY+Y E  K  S + E+   +   R  +   ++      S++D+   +    VNEA L   EGI    A+ DI +V G+GFP   GG   + D  G++ +  RL ++ S YG  F PC  L + A
Sbjct:  629 GRKSGKGFYIYQEGSKNKSLNSEMDNILANLRLPAKPEVS------SDEDVQYRVITRFVNEAVLCLQEGILATPAEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKVVDRLRKYESAYGTQFTPCQLLLDHA 754          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: ECHA_PIG (Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa GN=HADHA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 3
Query:   48 GETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAA 443
            G  + KGFY+Y E  K   +  V    E   +   +   P  +  S++DI   +    VNEA L   EGI    A+ DI +V G+GFP   GG   + D  G++ +  RL ++ ++YG+ F PC  L + A+
Sbjct:  629 GRKSGKGFYVYQEGVK---NRNVNSDTESILASLKIPSRPDIS--SDEDIQYRLVTRFVNEAVLCLQEGILATPAEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKVVDRLRKYEAIYGKQFTPCQLLIDHAS 755          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_SHISS (Fatty acid oxidation complex subunit alpha OS=Shigella sonnei (strain Ss046) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 46/155 (29.68%), Postives = 69/155 (44.52%), Query Frame = 3
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGATLSAPVEQAK 482
            I  + +  R G+    GF+ Y E  K  P  E    +E    +      PK    SE++I+  +  P+VNE      EGI    A+ D+A V G+GFP + GG   W D+LGS       +++  L G  ++    L  +A        PVE A+
Sbjct:  572 IDALFDANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVE---DLLAEVSQPK-RDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHL-GPLYEVPEGLRNKARHNEPYYPPVEPAR 721          
The following BLAST results are available for this feature:
BLAST of CX290730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
FADJ_SHESA5.313e-1231.91Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHELP5.313e-1232.64Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SALSV5.313e-1231.29Fatty acid oxidation complex subunit alpha OS=Salm... [more]
ECHP_HUMAN5.313e-1229.45Peroxisomal bifunctional enzyme OS=Homo sapiens GN... [more]
FADJ_CITK86.939e-1229.73Fatty acid oxidation complex subunit alpha OS=Citr... [more]
FADB_PSESM6.939e-1229.05Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADJ_SHEHH9.063e-1231.43Fatty acid oxidation complex subunit alpha OS=Shew... [more]
ECHA_MOUSE9.063e-1232.58Trifunctional enzyme subunit alpha, mitochondrial ... [more]
ECHA_PIG1.184e-1132.58Trifunctional enzyme subunit alpha, mitochondrial ... [more]
FADB_SHISS1.546e-1129.68Fatty acid oxidation complex subunit alpha OS=Shig... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02026E12SK IF1 Citrus clementina cDNA clone C02026E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290730 ID=CX290730; Name=CX290730; organism=Citrus clementina; type=EST; length=670bp
ACCTATAATCAATGATTATCCCAATTATGCAAGAGGATAAGAGAGCAGGT
GAAACCACTCGCAAAGGTTTCTATTTGTATGATGAGAGACGAAAAGCTAG
CCCAGATCCTGAAGTAAAGAAATTCATTGAGAAGGCTAGGAGCATGTCTG
GTGTTGCCATTAACCCTAAGTTTGCAAAATTATCTGAGAAGGATATTGTG
GAGATGATATTCTTTCCGGTGGTGAATGAGGCCTGTCTTGTCTTTGCTGA
AGGTATTGCAGTCAAGGCAGCTGACCTTGACATTGCGTCTGTTATGGGCA
TGGGTTTTCCAGTTTACAGGGGAGGAATCATGTTCTGGGCCGACTCTCTT
GGATCGAAGTACATTTACTCACGATTGGAGGAATGGTCAAGCTTGTACGG
AGAATTTTTTAAGCCATGTGCTTTCTTGGCTGAAAGAGCTGCCAGGGGAG
CTACTCTGAGTGCTCCGGTGGAACAAGCCAAGTCTAAATTATAAGATAAA
ACTTTGCTTTGTTTGTTGGTTGTTGAACTTAGGGAACAATTTCAGAACAT
TTTTCTTTCTGCTGTGCTGCTTTCTCTTTTCAATTCCCAGATGAGATATG
CTCGGCAGGATCCAAATAATTTATGTGATAATAAATTATGTTATATAAAA
AAAAAAAAAAAAAAAAAAAA
back to top