CX290730

Overview
NameCX290730
Unique NameCX290730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_SHIFL (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri GN=fadB PE=3 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 46/155 (29.68%), Postives = 69/155 (44.52%), Query Frame = 3 
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGATLSAPVEQAK 482
            I  + +  R G+    GF+ Y E  K  P  E    +E    +      PK    SE++I+  +  P+VNE      EGI    A+ D+A V G+GFP + GG   W D+LGS       +++  L G  ++    L  +A        PVE A+
Sbjct:  572 IDALFDANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVE---DLLAEVSQPK-RDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHL-GPLYEVPEGLRNKARHNEPYYPPVEPAR 721
[Close]
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_SHIF8 (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri serotype 5b (strain 8401) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 46/155 (29.68%), Postives = 69/155 (44.52%), Query Frame = 3 
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGATLSAPVEQAK 482
            I  + +  R G+    GF+ Y E  K  P  E    +E    +      PK    SE++I+  +  P+VNE      EGI    A+ D+A V G+GFP + GG   W D+LGS       +++  L G  ++    L  +A        PVE A+
Sbjct:  572 IDALFDANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVE---DLLAEVSQPK-RDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHL-GPLYEVPEGLRNKARHNEPYYPPVEPAR 721
[Close]
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_SHIB3 (Fatty acid oxidation complex subunit alpha OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 46/155 (29.68%), Postives = 69/155 (44.52%), Query Frame = 3 
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGATLSAPVEQAK 482
            I  + +  R G+    GF+ Y E  K  P  E    +E    +      PK    SE++I+  +  P+VNE      EGI    A+ D+A V G+GFP + GG   W D+LGS       +++  L G  ++    L  +A        PVE A+
Sbjct:  572 IDALFDANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVE---DLLAEVSQPK-RDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHL-GPLYEVPEGLRNKARHNEPYYPPVEPAR 721
[Close]
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_PSEAE (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 41/148 (27.70%), Postives = 74/148 (50.00%), Query Frame = 3 
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASP----DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            + +M E  R G+   KGFY Y+  ++  P    DP+  + ++         I  +  +++++DIV  +  P+  E      +GI   AA+ D+  + G+GFP +RGG + + DS+G     +  ++++ L G  + P A L E A  G
Sbjct:  572 VDVMYEANRLGQKNGKGFYAYETDKRGKPKKVTDPQAYEVLKP--------IVVEQREVTDEDIVNFMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALADKYAEL-GALYHPTAKLREMAKNG 710
[Close]
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_PSEAB (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 41/148 (27.70%), Postives = 74/148 (50.00%), Query Frame = 3 
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASP----DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            + +M E  R G+   KGFY Y+  ++  P    DP+  + ++         I  +  +++++DIV  +  P+  E      +GI   AA+ D+  + G+GFP +RGG + + DS+G     +  ++++ L G  + P A L E A  G
Sbjct:  572 VDVMYEANRLGQKNGKGFYAYETDKRGKPKKVTDPQAYEVLKP--------IVVEQREVTDEDIVNFMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALADKYAEL-GALYHPTAKLREMAKNG 710
[Close]
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_PSEA8 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa (strain LESB58) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 41/148 (27.70%), Postives = 74/148 (50.00%), Query Frame = 3 
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASP----DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            + +M E  R G+   KGFY Y+  ++  P    DP+  + ++         I  +  +++++DIV  +  P+  E      +GI   AA+ D+  + G+GFP +RGG + + DS+G     +  ++++ L G  + P A L E A  G
Sbjct:  572 VDVMYEANRLGQKNGKGFYAYETDKRGKPKKVTDPQAYEVLKP--------IVVEQREVTDEDIVNFMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALADKYAEL-GALYHPTAKLREMAKNG 710
[Close]
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_PSEA7 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa (strain PA7) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 41/148 (27.70%), Postives = 74/148 (50.00%), Query Frame = 3 
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASP----DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            + +M E  R G+   KGFY Y+  ++  P    DP+  + ++         I  +  +++++DIV  +  P+  E      +GI   AA+ D+  + G+GFP +RGG + + DS+G     +  ++++ L G  + P A L E A  G
Sbjct:  572 VDVMYEANRLGQKNGKGFYAYETDKRGKPKKVTDPQAYEVLKP--------IVVEQREVTDEDIVNFMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALADKYAEL-GALYHPTAKLREMAKNG 710
[Close]
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_ECOSE (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain SE11) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 46/155 (29.68%), Postives = 69/155 (44.52%), Query Frame = 3 
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGATLSAPVEQAK 482
            I  + +  R G+    GF+ Y E  K  P  E    +E    +      PK    SE++I+  +  P+VNE      EGI    A+ D+A V G+GFP + GG   W D+LGS       +++  L G  ++    L  +A        PVE A+
Sbjct:  572 IDALFDANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVE---DLLAEVSQPK-RDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHL-GPLYEVPEGLRNKARHNEPYYPPVEPAR 721
[Close]
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_ECOLI (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12) GN=fadB PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 46/155 (29.68%), Postives = 69/155 (44.52%), Query Frame = 3 
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGATLSAPVEQAK 482
            I  + +  R G+    GF+ Y E  K  P  E    +E    +      PK    SE++I+  +  P+VNE      EGI    A+ D+A V G+GFP + GG   W D+LGS       +++  L G  ++    L  +A        PVE A+
Sbjct:  572 IDALFDANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVE---DLLAEVSQPK-RDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHL-GPLYEVPEGLRNKARHNEPYYPPVEPAR 721
[Close]
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADB_ECOLC (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 46/155 (29.68%), Postives = 69/155 (44.52%), Query Frame = 3 
Query:   18 IPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGATLSAPVEQAK 482
            I  + +  R G+    GF+ Y E  K  P  E    +E    +      PK    SE++I+  +  P+VNE      EGI    A+ D+A V G+GFP + GG   W D+LGS       +++  L G  ++    L  +A        PVE A+
Sbjct:  572 IDALFDANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVE---DLLAEVSQPK-RDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHL-GPLYEVPEGLRNKARHNEPYYPPVEPAR 721
The following BLAST results are available for this feature:
BLAST of CX290730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
FADB_SHIFL1.546e-1129.68Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADB_SHIF81.546e-1129.68Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADB_SHIB31.546e-1129.68Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADB_PSEAE1.546e-1127.70Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEAB1.546e-1127.70Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEA81.546e-1127.70Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEA71.546e-1127.70Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_ECOSE1.546e-1129.68Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADB_ECOLI1.546e-1129.68Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADB_ECOLC1.546e-1129.68Fatty acid oxidation complex subunit alpha OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC02026E12SK IF1 Citrus clementina cDNA clone C02026E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290730 ID=CX290730; Name=CX290730; organism=Citrus clementina; type=EST; length=670bp
ACCTATAATCAATGATTATCCCAATTATGCAAGAGGATAAGAGAGCAGGT
GAAACCACTCGCAAAGGTTTCTATTTGTATGATGAGAGACGAAAAGCTAG
CCCAGATCCTGAAGTAAAGAAATTCATTGAGAAGGCTAGGAGCATGTCTG
GTGTTGCCATTAACCCTAAGTTTGCAAAATTATCTGAGAAGGATATTGTG
GAGATGATATTCTTTCCGGTGGTGAATGAGGCCTGTCTTGTCTTTGCTGA
AGGTATTGCAGTCAAGGCAGCTGACCTTGACATTGCGTCTGTTATGGGCA
TGGGTTTTCCAGTTTACAGGGGAGGAATCATGTTCTGGGCCGACTCTCTT
GGATCGAAGTACATTTACTCACGATTGGAGGAATGGTCAAGCTTGTACGG
AGAATTTTTTAAGCCATGTGCTTTCTTGGCTGAAAGAGCTGCCAGGGGAG
CTACTCTGAGTGCTCCGGTGGAACAAGCCAAGTCTAAATTATAAGATAAA
ACTTTGCTTTGTTTGTTGGTTGTTGAACTTAGGGAACAATTTCAGAACAT
TTTTCTTTCTGCTGTGCTGCTTTCTCTTTTCAATTCCCAGATGAGATATG
CTCGGCAGGATCCAAATAATTTATGTGATAATAAATTATGTTATATAAAA
AAAAAAAAAAAAAAAAAAAA
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