CX290764

Overview
NameCX290764
Unique NameCX290764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.780e-47
Identity = 100/191 (52.36%), Postives = 133/191 (69.63%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQK------VLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRK 573
            L+ GPPGTGK+ LAKAVATE  +TFF+ISSS L SK+ GESEKLV  LF+MAR  AP+ IFIDEIDS+C +RG   E EASRR+K ELLVQM GVG   +       V+VLAATN P+ +D+A+RRR +KRIYIPLP  K R+ + +++L +      + + E +A   +G+SG+DI+   +D     +R+
Sbjct:  243 LMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKEL-ELADDVNIECIAENMDGYSGADITNVCRDASLMAMRR 432          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.780e-47
Identity = 100/191 (52.36%), Postives = 133/191 (69.63%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG------HNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRK 573
            L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  AP+ IFIDEIDS+C +RG   E EASRR+K ELLVQM GVG         + V+VLAATN P+ +D+A+RRR +KRIYIPLP  K R  + +++L +      + D   +A ++EG+SG+DI+   +D     +R+
Sbjct:  241 LMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTTIFIDEIDSMCSRRGTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKEL-ELANDVDMAKIAEQSEGYSGADITNVCRDASLMAMRR 430          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.325e-47
Identity = 101/191 (52.88%), Postives = 134/191 (70.16%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG---HND---QKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRK 573
            L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  +P+ IFIDEIDS+C +RG   E EASRR+K ELLVQM GVG    ND   + V+VLAATN P+ +D+A+RRR +KRIYIPLP  K R+ + ++ L +      + +  S+A   EG+SG+DI+   +D     +R+
Sbjct:  246 LMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLREL-ELADDVNLASIAENMEGYSGADITNVCRDASLMAMRR 435          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.037e-47
Identity = 102/209 (48.80%), Postives = 137/209 (65.55%), Query Frame = 1
Query:    1 DSAEAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR-GEGNESEASRRIKTELLVQMQGVGH--------NDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFK 600
            + A   LL+GPPGTGK+ LA+AVATE+ S FFSIS+S L SK++GESEKLV +LF +A++ +PSIIF+DEIDSL   R  +GNE E SRRIKTE L+Q   +          +  +VLVLAATN P+ +D A RRRF +R YIPLPD   R+      L    H+L+  D E++ + TE +SGSD++   KD    P+R   +++ F K
Sbjct:  490 EPARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARRRFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLEDIEAIVKATEYYSGSDLTALAKDAAMGPLRSLGESLLFTK 698          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.966e-47
Identity = 101/191 (52.88%), Postives = 134/191 (70.16%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG---HND---QKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRK 573
            L+ GPPGTGK+ LAKAVATE  +TFF++SSS L SK+ GESEKLV  LF+MAR  +P+ IFIDEIDS+C +RG   E EASRR+K ELLVQM GVG    ND   + V+VLAATN P+ +D+A+RRR +KRIYIPLP  K R+ + ++ L +      + +  S+A   EG+SG+DI+   +D     +R+
Sbjct:  246 LMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLREL-ELADDVNLASIAENMEGYSGADITNVCRDASLMAMRR 435          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 3.966e-47
Identity = 102/200 (51.00%), Postives = 136/200 (68.00%), Query Frame = 1
Query:   10 EAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG--EGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNL-----TESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAM 588
            +  LLYGPPGTGK+ LAKAVATE  +TFF+IS+S +VSKW G+SEKLV  LF++AR  APS IF+DE++S+  QRG   G E E S R+KTELLVQM G+  ++  V VLAA+N P+ LD A+ RR +KRI + LP  +ARQ M    L     +      TE ++  L+++TEG+SGSDI +  ++    PVRK  DA+
Sbjct:  288 KGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVRKIFDAL 487          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.154e-46
Identity = 98/190 (51.58%), Postives = 132/190 (69.47%), Query Frame = 1
Query:    7 AEAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRK 573
            A   LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFIDE+DSL  +R EG E +ASRR+KTE L++  GV    D +VLV+ ATN P  LD A+ RRF KR+Y+ LP+ + R  + K  L    + L+E +   L+R TEG+SGSDI+   KD    P+R+
Sbjct:  359 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIRE 547          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.507e-46
Identity = 98/190 (51.58%), Postives = 131/190 (68.95%), Query Frame = 1
Query:    7 AEAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRK 573
            A   LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFIDE+DSL  +R EG E +ASRR+KTE L++  GV    D +VLV+ ATN P  LD A+ RRF KR+Y+ LP+ + R  + K  L    + L E +   L+R TEG+SGSDI+   KD    P+R+
Sbjct:  362 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRE 550          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.571e-46
Identity = 96/190 (50.53%), Postives = 132/190 (69.47%), Query Frame = 1
Query:    7 AEAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRK 573
            A   LL+GPPG GK+ LAKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE  PSIIFIDE+DSL  +R EG E +ASRR+KTE L++  GV    + ++LV+ ATN P  LD A+ RRF KR+Y+ LP+ + R  + K  L      LT+ +   LAR T+G+SGSD++  VKD    P+R+
Sbjct:  372 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSSGEDRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQKELAQLARMTDGYSGSDLTALVKDAALGPIRE 560          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 185.267 bits (469), Expect = 2.571e-46
Identity = 95/191 (49.74%), Postives = 134/191 (70.16%), Query Frame = 1
Query:    7 AEAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQ--KVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRK 573
            A+  LL+GPPG GK+ LA+AVATE  +TFFSIS++ L SK++G+ EKLV +LF +ARE  PSIIFIDE+DS+  +R   NE EA+RR+KTE LVQ  G+  N +  +++V+AATN P  LD+A  RRF KR+Y+ LPD   R+ + +  L      L+++D   LA+ TEG+SGSD++   +D   EP+R+
Sbjct:  536 AKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLVRALFAVARELQPSIIFIDEVDSVLSER-SSNEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALRRFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADLAHLAQLTEGYSGSDLTALARDAALEPIRE 725          
The following BLAST results are available for this feature:
BLAST of CX290764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KTNA1_XENLA1.780e-4752.36Katanin p60 ATPase-containing subunit (Fragment) O... [more]
KTNA1_SALSA1.780e-4752.36Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
KTNA1_RAT2.325e-4752.88Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
YKX4_SCHPO3.037e-4748.80Uncharacterized AAA domain-containing protein C328... [more]
KTNA1_MOUSE3.966e-4752.88Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
KATL2_HUMAN3.966e-4751.00Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
SPAST_XENLA1.154e-4651.58Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
SPAST_XENTR1.507e-4651.58Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
SPAST_CHICK2.571e-4650.53Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]
SPAST_ANOGA2.571e-4649.74Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]

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Properties
Property NameValue
Genbank descriptionC02026H11SK IF1 Citrus clementina cDNA clone C02026H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290764 ID=CX290764; Name=CX290764; organism=Citrus clementina; type=EST; length=673bp
GATTCGGCCGAGGCTTTTCTATTGTATGGACCACCTGGAACTGGAAAGTC
ATACCTGGCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTA
TTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTT
GTCTCAAGCCTTTTCCAGATGGCTCGTGAAAGTGCTCCTTCCATTATTTT
TATTGATGAAATAGATTCCTTATGTGGTCAGCGTGGAGAAGGCAATGAGA
GCGAAGCTTCTCGGCGCATCAAAACTGAACTTCTTGTACAGATGCAGGGT
GTTGGACACAACGATCAGAAAGTTCTTGTTCTTGCTGCAACAAATACTCC
CTATGCTCTAGATCAGGCCATCCGGCGACGTTTTGACAAGCGTATATACA
TCCCTCTTCCAGATTTGAAGGCAAGACAGCACATGTTCAAGGTGCATTTA
GGAGATACACCCCACAACTTGACTGAAAGTGATTTTGAAAGTTTAGCTCG
CAAGACCGAGGGGTTTTCTGGTTCTGATATTTCCGTTTGTGTAAAGGATG
TCTTGTTTGAACCTGTACGGAAAACTCAGGATGCCATGTTTTTCTTTAAG
ACCTCTAATGGTATGTGGATGCCATGTGGACCGAAGCAATCAGGTGCTGT
TCAGATTTCGATGCAGGAGCTTG
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