CX290765

Overview
NameCX290765
Unique NameCX290765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.195e-26
Identity = 70/166 (42.17%), Postives = 104/166 (62.65%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LAKA+A EA   FF+IS SD V  ++      V  +F+ A+++AP IIFIDEID++  QRG G       R +T  ++LV+M G   N + ++V+AATN P  LD A+ R  RFD+++ + LPD++ R+ + KVH+   P   T+ D   +AR T GFSG+D++ L
Sbjct:  201 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LATDIDAAIIARGTPGFSGADLANL 364          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.195e-26
Identity = 70/166 (42.17%), Postives = 104/166 (62.65%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LAKA+A EA   FF+IS SD V  ++      V  +F+ A+++AP IIFIDEID++  QRG G       R +T  ++LV+M G   N + ++V+AATN P  LD A+ R  RFD+++ + LPD++ R+ + KVH+   P   T+ D   +AR T GFSG+D++ L
Sbjct:  201 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LATDIDAAIIARGTPGFSGADLANL 364          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.070e-25
Identity = 66/166 (39.76%), Postives = 102/166 (61.45%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR--GEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LAKAVA   ++TF  +  S+LV K++ +  KLV  +F+MAR+ APSIIFIDE+DS+  +R        +  +R   +LL +M G     + + ++AATN P  LD AI R  RFD+ +++P+P ++AR  + K+H G       + DF+ LA+ TEG SG+D+  +
Sbjct:  209 LAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKR-KNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMT-LAGDIDFKKLAKVTEGMSGADLKAI 372          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.070e-25
Identity = 62/168 (36.90%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504
            L + +A++  + F  +S S LV+KW+ E EK+V + F +AR   PS++FI ++D L     + +E     RIK+ELL+Q+ GV    ++ VLV+ +T+ P  +D+++RR F KR+ +PLPD  AR  +    L    + L++ +   L ++T+GFSG D+ RLC+  L
Sbjct:  513 LGRCMASQLGAAFLLLSGSALVTKWLGEGEKIVQASFLIARCRQPSVVFISDVDLLLSS--QLSEESPVNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRRYFVKRLLVPLPDATARHQIISQLLSQHNYCLSDKEVTLLVQRTDGFSGLDVVRLCQEAL 678          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.826e-25
Identity = 66/169 (39.05%), Postives = 100/169 (59.17%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG---EGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCK 495
            LAKA+A E  + F SI   +L++ W  ESE  V  +F  AR +AP ++F DE+DS+   RG    G+   AS R+  ++L +M G+ +  + V ++ ATN P  +D A+ R  R D+ IYIPLPD  +R  + K  L  TP +  + D   LA+ T GFSG+D++ +C+
Sbjct:  533 LAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGM-NAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLS-KDLDLTFLAKNTVGFSGADLTEICQ 699          

HSP 2 Score: 102.064 bits (253), Expect = 2.089e-21
Identity = 61/165 (36.97%), Postives = 97/165 (58.79%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLC 492
            +A+AVA E  S FF I+  +++SK   ESE  +   F+   ++ P+I+FIDEID++  +R E    +  RRI ++LL  M GV      ++V+AATN P ++D A+RR  RFD+ I I +PD   R  + ++H  +      + D E +A +  GF G+D++ LC
Sbjct:  260 IARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAIAPKR-EKTNGEVERRIVSQLLTLMDGV-KGRSNLVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNM-KLADDVDLEQIANECHGFVGADLASLC 421          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.826e-25
Identity = 71/166 (42.77%), Postives = 104/166 (62.65%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LAKA+A EA   FF+IS SD V  ++      V  +F+ AR+SAP IIFIDEID++  QRG G       R +T  ++LV+M G   N + V+++AATN P  LD A+ R  RFD+++ + LPD++ R+ + KVH+   P +  + D   +AR T GFSG+D++ L
Sbjct:  201 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHARKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGN-EGVILIAATNRPDVLDPALLRPGRFDRQVIVALPDVRGRKQILKVHMRKVPLS-EDVDPMIIARGTPGFSGADLANL 364          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: CDC48_YEAST (Cell division control protein 48 OS=Saccharomyces cerevisiae GN=CDC48 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.826e-25
Identity = 66/163 (40.49%), Postives = 98/163 (60.12%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGE--GNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDI 480
            LAKAVATE  + F S+   +L+S W  ESE  +  +F  AR +AP+++F+DE+DS+   RG   G+   AS R+  +LL +M G+ +  + V V+ ATN P  +D AI R  R D+ IY+PLPD  AR  +    L  TP      +  ++A+ T+GFSG+D+
Sbjct:  537 LAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSLGDAGGASDRVVNQLLTEMDGM-NAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRKTPLE-PGLELTAIAKATQGFSGADL 697          

HSP 2 Score: 108.997 bits (271), Expect = 1.709e-23
Identity = 64/165 (38.79%), Postives = 102/165 (61.82%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLC 492
            +A+AVA E  + FF I+  +++SK   ESE  +   F+ A ++AP+IIFIDEIDS+  +R + N  +  RR+ ++LL  M G+      V+V+AATN P ++D A+RR  RFD+ + I +PD   R  + ++H  +      + D E+LA +T G+ G+DI+ LC
Sbjct:  264 MARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTN-GEVERRVVSQLLTLMDGMKAR-SNVVVIAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEVLRIHTKNM-KLADDVDLEALAAETHGYVGADIASLC 425          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.826e-25
Identity = 64/162 (39.51%), Postives = 97/162 (59.88%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG-EGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDI 480
            LAKA+A E  + F S+   +L+S W  ESE  V  +F  AR +AP ++F+DE+DS+   RG    +S    R+  +LL +M GV ++ + V V+ ATN P  +D A+ R  R D+ IY+PLPD +AR  + +  L  TP    + D  ++A+ T GFSG+D+
Sbjct:  547 LAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDGV-NSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTP-VAEDVDLRAVAKATHGFSGADL 706          

HSP 2 Score: 105.916 bits (263), Expect = 1.447e-22
Identity = 61/165 (36.97%), Postives = 100/165 (60.61%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLC 492
            +A+AVA E  + FF I+  +++SK   ESE  +   F+ A +++P+IIFIDEIDS+  +R E    +  RR+ ++LL  M G+      V+V+AATN P ++D A+RR  RFD+ + + +PD   R  + ++H  +      + D E +A +T G+ GSD++ LC
Sbjct:  274 MARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKR-EKTNGEVERRVVSQLLTLMDGMKAR-SNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNM-KLADDVDLEQIAAETHGYVGSDLASLC 435          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.114e-25
Identity = 65/166 (39.16%), Postives = 102/166 (61.45%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR--GEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LAKAVA   ++TF  +  S+LV K++ +  KLV  +F+MAR+ APSIIFIDE+DS+  +R        +  +R   +LL +M G     + + ++AATN P  LD AI R  RFD+ +++P+P ++AR  + K+H  +      + DF+ LA+ TEG SG+D+  +
Sbjct:  209 LAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKR-KNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHC-EKMTLAEDIDFKKLAKATEGMSGADLKAI 372          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.114e-25
Identity = 69/166 (41.57%), Postives = 104/166 (62.65%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LAKA+A EA   FF+IS SD V  ++      V  +F+ +R+SAP IIFIDEID++  QRG G       R +T  ++LV+M G   N + ++++AATN P  LD A+ R  RFD+++ + LPD++ R+ + KVH+   P +  + D   +AR T GFSG+D++ L
Sbjct:  201 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGN-EGIILIAATNRPDVLDPALLRPGRFDRQVIVALPDIRGREQILKVHMRKVPLS-KDVDPMIIARGTPGFSGADLANL 364          
The following BLAST results are available for this feature:
BLAST of CX290765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
FTSH_SALTY8.195e-2642.17Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI8.195e-2642.17Cell division protease ftsH OS=Salmonella typhi GN... [more]
PSMR_METAC1.070e-2539.76Proteasome-activating nucleotidase OS=Methanosarci... [more]
FIGN_DANRE1.070e-2536.90Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
TERA1_CAEEL1.826e-2539.05Transitional endoplasmic reticulum ATPase homolog ... [more]
FTSH_BUCAP1.826e-2542.77Cell division protease ftsH OS=Buchnera aphidicola... [more]
CDC48_YEAST1.826e-2540.49Cell division control protein 48 OS=Saccharomyces ... [more]
CDC48_SCHPO1.826e-2539.51Cell division cycle protein 48 OS=Schizosaccharomy... [more]
PSMR_METMA3.114e-2539.16Proteasome-activating nucleotidase OS=Methanosarci... [more]
FTSH_BUCAI3.114e-2541.57Cell division protease ftsH OS=Buchnera aphidicola... [more]

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Properties
Property NameValue
Genbank descriptionC02026H12SK IF1 Citrus clementina cDNA clone C02026H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290765 ID=CX290765; Name=CX290765; organism=Citrus clementina; type=EST; length=570bp
TACCTGGCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTAT
TTCTTCATCAGACCTGGTTTCAAAGTGGATGGTTGAAAGTGAAAAGCTTG
TCTCAAGCCTTTTCCAGATGGCTCGTGAAAGTGCTCCTTCCATTATTTTT
ATTGATGAAATAGATTCCTTATGTGGTCAGCGTGGAGAAGGCAATGAGAG
CAAAGCTTCTCGGCGCATCAAAACTGAACTTCTTGTACAGATGCAGGGTG
TTGGACACAACGATCAGAAAGTTCTTGTTCTTGCTGCAACAAATACTCCC
TATGCTCTAGATCAGGCCATCCGGCGACGTTTTGACAAGCGTATATACAT
CCCTCTTCCAGATTTGAAGGCAAGACAGCTCATGTTCAAGGTGCATTTAG
GAGATACACCCCACAACTTGACTGAAAGTGATTTTGAAAGTTTAGCTCGC
AAGACCGAGGGGTTTTCTGGCTCTGATATTTCCCGTTTGTGTAAAGGATG
TCTTGGTTGAACCTGTACAGAAAACTCAGGATGCCATGTTTTTCTTTAAG
ACCTCTAATGGTATGTGGAT
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