CX290765

Overview
NameCX290765
Unique NameCX290765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.067e-25
Identity = 69/166 (41.57%), Postives = 103/166 (62.05%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LAKA+A EA   FF+IS SD V  ++      V  +F+ A+++AP IIFIDEID++  QRG G       R +T  ++LV+M G   N + ++V+AATN P  LD A+ R  RFD+++ + LPD++ R+ + KVH+   P    + D   +AR T GFSG+D++ L
Sbjct:  201 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDIDAAIIARGTPGFSGADLANL 364          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.067e-25
Identity = 69/166 (41.57%), Postives = 103/166 (62.05%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LAKA+A EA   FF+IS SD V  ++      V  +F+ A+++AP IIFIDEID++  QRG G       R +T  ++LV+M G   N + ++V+AATN P  LD A+ R  RFD+++ + LPD++ R+ + KVH+   P    + D   +AR T GFSG+D++ L
Sbjct:  201 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDIDAAIIARGTPGFSGADLANL 364          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.067e-25
Identity = 69/166 (41.57%), Postives = 103/166 (62.05%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LAKA+A EA   FF+IS SD V  ++      V  +F+ A+++AP IIFIDEID++  QRG G       R +T  ++LV+M G   N + ++V+AATN P  LD A+ R  RFD+++ + LPD++ R+ + KVH+   P    + D   +AR T GFSG+D++ L
Sbjct:  201 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDIDAAIIARGTPGFSGADLANL 364          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.067e-25
Identity = 69/166 (41.57%), Postives = 103/166 (62.05%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LA+A+A EA   FF+IS SD V  ++      V  +F+ A+++AP +IFIDEID++  QRG G       R +T  ++LV+M G   ND  V+V+AATN P  LD A+ R  RFD+++ + LPD+K R+ + KVH+        + D  +LAR T G+SG+D++ L
Sbjct:  200 LARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGND-GVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKV-SVAQDVDAMTLARGTPGYSGADLANL 363          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: SPAT5_HUMAN (Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 5.312e-25
Identity = 67/167 (40.12%), Postives = 102/167 (61.08%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGH--NDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLC 492
            +A+AVA E  +    I+  +++SK+  E+E  +  +F  A    PSIIFIDE+D+LC +R EG +++  +R+   LL  M G+G   ++ +VLVL ATN P+ALD A+RR  RFDK I I +P+ + R  + +  L   PH LTE++   LA    G+ G+D+  LC
Sbjct:  403 IARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSIIFIDELDALCPKR-EGAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKVLC 568          

HSP 2 Score: 111.694 bits (278), Expect = 2.636e-24
Identity = 63/167 (37.72%), Postives = 101/167 (60.48%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG-NESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCK 495
            +AKA+A E+   F +I   +L++K++ ESE+ V   F+ AR  APSIIF DE+D+L  +RG        + R+  +LL +M G+    + V +LAATN P  +D+A+ R  R D+ IY+PLPD   R+ +FK+     P +  E D + L  +T+ +SG++I  +C+
Sbjct:  677 IAKALANESGLNFLAIKGPELMNKYVGESERAVRETFRKARAVAPSIIFFDELDALAVERGSSLGAGNVADRVLAQLLTEMDGI-EQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVS-NEVDLDELILQTDAYSGAEIVAVCR 841          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: SPAT5_MOUSE (Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.938e-25
Identity = 67/167 (40.12%), Postives = 101/167 (60.48%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGH--NDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLC 492
            +A+AVA E  +    I+  +++SK+  E+E  +  +F  A    PSIIFIDE+D+LC +R EG +S+  +R+   LL  M G+G   ++ +VLVL ATN P ALD A+RR  RFDK I I +P+ + R  + +  L   PH LT+++   LA    G+ G+D+  LC
Sbjct:  403 IARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR-EGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVGADLKALC 568          

HSP 2 Score: 110.538 bits (275), Expect = 5.873e-24
Identity = 63/167 (37.72%), Postives = 101/167 (60.48%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN-ESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCK 495
            +AKA+A E+   F +I   +L++K++ ESE+ V  +F+ AR  APSIIF DE+D+L  +RG  +     + R+  +LL +M G+    + V VLAATN P  +D+A+ R  R D+ IY+PLPD   R+ +  +     P +  E D + L  +T+ +SG++I  +CK
Sbjct:  677 IAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGI-EQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPIS-NEVDLDELVLQTDTYSGAEIIAVCK 841          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.938e-25
Identity = 68/166 (40.96%), Postives = 101/166 (60.84%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LAKAVA EA   F+SIS SD V  ++      V  LF+ A+++APSIIFIDEID++  QRG G       R +T  +LLV+M G   +   V+V+AATN    LD A+ R  RFD+++ +  PD+K R+ + KVH  + P   ++ D  ++A +T G+ G+D+  +
Sbjct:  242 LAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFQDDGNSVIVIAATNRSDVLDPALLRPGRFDRKVLVGAPDVKGREAVLKVHAKNKP-LASDVDLHNVATQTPGYVGADLENV 406          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.546e-24
Identity = 72/171 (42.11%), Postives = 104/171 (60.82%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARK----TEGFSGSDISRLC 492
            LAKA A EA+  F ++S S+ +  ++      V  LF +AR++AP I+FIDEID++  +RG GN    S +  T  +LLV+M G  +    V++LA TN P  LD A+ R  RFD++I+I  PD+K R  +FKVHL     + T  + E LARK    T GFSG+D++ +C
Sbjct:  358 LAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGF-NTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDST-LEKEKLARKLASLTPGFSGADVANVC 526          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24
Identity = 68/166 (40.96%), Postives = 102/166 (61.45%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRL 489
            LAKA+A EA   FF+IS SD V  ++      V  +F+ +R+ AP IIFIDEID++  QRG G       R +T  ++LV+M G   N + ++++AATN P  LD A+ R  RFD++I++ LPD++ R+ + +VH+   P      D   +AR T GFSG+D++ L
Sbjct:  201 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKVAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGN-EGIILIAATNRPDVLDPALLRPGRFDRQIFVALPDIRGREKIIQVHMKKVPLG-NNVDPMIIARGTPGFSGADLANL 364          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.443e-24
Identity = 69/169 (40.83%), Postives = 101/169 (59.76%), Query Frame = 1
Query:    4 LAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGE---GNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTES-DFESLARKTEGFSGSDISRLC 492
            LAKAVATE ++TF  +  S+LV K++ E   LV  +F++A+E APSIIFIDEID++  +R +   G + +  R +  +LL +M G       V ++ ATN P  LD AI R  RFD+ I +P PD K R  + K+H      NL E  + E +A+ TEG  G+++  +C
Sbjct:  220 LAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTL-MQLLAEMDGFDARGD-VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIH--TRKMNLAEDVNLEEIAKMTEGCVGAELKAIC 384          
The following BLAST results are available for this feature:
BLAST of CX290765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
FTSH_SHIFL4.067e-2541.57Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_ECOLI4.067e-2541.57Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO574.067e-2541.57Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH1_HAEIN4.067e-2541.57Cell division protease ftsH homolog 1 OS=Haemophil... [more]
SPAT5_HUMAN5.312e-2540.12Spermatogenesis-associated protein 5 OS=Homo sapie... [more]
SPAT5_MOUSE6.938e-2540.12Spermatogenesis-associated protein 5 OS=Mus muscul... [more]
FTSH_LACLA6.938e-2540.96Cell division protease ftsH homolog OS=Lactococcus... [more]
AFG32_BOVIN1.546e-2442.11AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
FTSH_BUCBP2.019e-2440.96Cell division protease ftsH OS=Buchnera aphidicola... [more]
PSMR_METJA3.443e-2440.83Proteasome-activating nucleotidase OS=Methanocaldo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02026H12SK IF1 Citrus clementina cDNA clone C02026H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290765 ID=CX290765; Name=CX290765; organism=Citrus clementina; type=EST; length=570bp
TACCTGGCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTAT
TTCTTCATCAGACCTGGTTTCAAAGTGGATGGTTGAAAGTGAAAAGCTTG
TCTCAAGCCTTTTCCAGATGGCTCGTGAAAGTGCTCCTTCCATTATTTTT
ATTGATGAAATAGATTCCTTATGTGGTCAGCGTGGAGAAGGCAATGAGAG
CAAAGCTTCTCGGCGCATCAAAACTGAACTTCTTGTACAGATGCAGGGTG
TTGGACACAACGATCAGAAAGTTCTTGTTCTTGCTGCAACAAATACTCCC
TATGCTCTAGATCAGGCCATCCGGCGACGTTTTGACAAGCGTATATACAT
CCCTCTTCCAGATTTGAAGGCAAGACAGCTCATGTTCAAGGTGCATTTAG
GAGATACACCCCACAACTTGACTGAAAGTGATTTTGAAAGTTTAGCTCGC
AAGACCGAGGGGTTTTCTGGCTCTGATATTTCCCGTTTGTGTAAAGGATG
TCTTGGTTGAACCTGTACAGAAAACTCAGGATGCCATGTTTTTCTTTAAG
ACCTCTAATGGTATGTGGAT
back to top