CX290808

Overview
NameCX290808
Unique NameCX290808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH8_RANPE (NADP-dependent alcohol dehydrogenase OS=Rana perezi GN=ADH8 PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30
Identity = 73/172 (42.44%), Postives = 105/172 (61.05%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VG S   G KA GASRIIGV T+ +K  KA   G TE LNP D ++P+ +VI   T+GG DY+ EC G    +  ALQS   G G+ V LG+      +     L L+GR+LKGS+FGG+K + ++  LV+ Y+KK+  V+  ++  L  + IN+AF L+  G+ +RS++
Sbjct:  201 GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIM 371          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 57/176 (32.39%), Postives = 92/176 (52.27%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL---FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VG +V  GA+  GA++II VD + +K E A   G T  +N  + +  V + ++ +T G GAD   + +G       A  +  D  G  V +GVP   P++     L   F  G  LK S +G   P+ D P L++ +L+    +D+F+T  +  +D+ +AF+ M  G+ LRSV+
Sbjct:  188 GAVGDAVIAGARLAGANKIIAVDRDAKKLEWATELGATHTVNATETD--VVEAVQALTGGFGADVVIDAVGRPETWKQAFYAR-DLAGTVVLVGVPT--PDMRLEMPLLDFFSRGGALKSSWYGDCLPERDFPVLIDLHLQGRLPLDKFVTERISLDDVEKAFHTMHAGEVLRSVV 358          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: YPHC_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yphC OS=Escherichia coli (strain K12) GN=yphC PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 64/179 (35.75%), Postives = 84/179 (46.93%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLG-VPKLKPEVAA---HYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMP 538
            G VG+     AK RGA RIIGVD  PE+   AK  GV +        E + Q+I  +T GGAD + +C G+      ALQS  D WG  V +G   K++ EV+A   H+   + G  +  SLF   K   DL          +      ITH    E    A+ LM  GKC + VI+ P
Sbjct:  184 GPVGMMAMMLAKGRGAKRIIGVDMLPERLAMAKQLGVMDH-GYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALQSTAD-WGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVT-SLFHMEKCAHDLTDW-------KLWPRNAITHRFSLEQAGDAYALMASGKCGKVVINFP 352          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH_THEBR (NADP-dependent alcohol dehydrogenase OS=Thermoanaerobacter brockii GN=adh PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 51/168 (30.36%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVT--LGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLL-FEDINQAFNLMKE 505
            G VGL    GAK RGA RII V + P   + AK +G T+ +N  D   P++  I  +T+G G D +    G+  ++ TA++    G  +A     G  ++ P     +G  ++ +T+KG L  G + +  +  L++    K     + +TH    F++I +AF LMK+
Sbjct:  176 GPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDG--PIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLR--MERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKD 339          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: XYLB_PSEPU (Aryl-alcohol dehydrogenase OS=Pseudomonas putida GN=xylB PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 52/174 (29.89%), Postives = 79/174 (45.40%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 535
            G VGLS    A   G + II VD    + E A   G T  +NP   N+P+ + IK I   G  Y  E  G   ++T A+ S   G  + + +G P +   V       L  R L+G + G       +P LV  Y + +F  D+ I     F++IN+A    ++G  L+ V+ +
Sbjct:  196 GAVGLSAVMAAVVAGCTTIIAVDVKENRLELASELGATHIINP-AANDPI-EAIKEIFADGVPYVLETSGLPAVLTQAILSSAIGGEIGI-VGAPPMGATVPVDINFLLFNRKLRGIVEGQSISDIFIPRLVELYRQGKFPFDKLIKF-YPFDEINRAAEDSEKGVTLKPVLRI 365          
The following BLAST results are available for this feature:
BLAST of CX290808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
ADH8_RANPE7.447e-3042.44NADP-dependent alcohol dehydrogenase OS=Rana perez... [more]
FADH_AMYME7.994e-1632.39NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]
YPHC_ECOLI7.482e-1435.75Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
ADH_THEBR1.560e-1130.36NADP-dependent alcohol dehydrogenase OS=Thermoanae... [more]
XYLB_PSEPU2.038e-1129.89Aryl-alcohol dehydrogenase OS=Pseudomonas putida G... [more]

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Properties
Property NameValue
Genbank descriptionC02027D07SK IF1 Citrus clementina cDNA clone C02027D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290808 ID=CX290808; Name=CX290808; organism=Citrus clementina; type=EST; length=671bp
GGATTCGGCCGAGGGAACTGTAGGCCTTTCTGTTGCACAAGGTGCAAAAG
CCAGAGGAGCGTCTAGAATTATTGGCGTTGACACTAACCCTGAGAAATGT
GAAAAAGCCAAAGCTTTTGGAGTTACAGAGTTTCTCAACCCAAATGATAA
TAATGAACCTGTTCAACAGGTTATTAAGAGAATTACTGATGGAGGGGCAG
ATTACTCGTTTGAATGTATTGGTGATACAGGAATGATAACTACTGCTTTA
CAATCTTGCTGTGATGGATGGGGTCTTGCAGTGACTCTTGGTGTACCAAA
ACTGAAGCCCGAAGTAGCAGCACACTATGGACTGTTTCTAAGTGGAAGAA
CACTGAAAGGCTCTCTATTTGGTGGATGGAAACCTAAAACTGACCTTCCT
TCATTAGTAAACAGGTATCTTAAAAAGGAGTTCATGGTCGATGAGTTTAT
CACCCATAATCTCCTGTTCGAGGATATCAATCAAGCTTTTAATCTCATGA
AAGAAGGGAAATGTTTGCGCAGTGTAATTCATATGCCGAAATAGTTATGT
TTGGGTTATCGAAACCAAGAAATAGAGACCAAACAACACTGTGGTCAGAT
GGATGAATGCACAAGTGATAATGCACAGCATTTGTGGAGATCTATGAGAA
GTATGTAGCTCTGTTCTTTTT
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