CX290808

Overview
NameCX290808
Unique NameCX290808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.447e-41
Identity = 85/172 (49.42%), Postives = 113/172 (65.70%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLSV  G KA GASRII VD N +K  KAK  G TE +NP D  +P+ +V+  +T  G DYSFE IG    +T AL SC + +G++V +GVP    +++    L  SGRT KGS+FGGWK K  +P LV  Y+KK+F++D  ITH L F  IN+ F+L++ GK +RSV+
Sbjct:  203 GGVGLSVVMGCKAAGASRIIAVDINKDKFAKAKELGATECINPKDFKKPIHEVLTEMTGQGVDYSFEVIGRIETMTAALASCHNNYGVSVIVGVPPAAQKISFDPMLIFSGRTWKGSVFGGWKSKDAVPKLVADYMKKKFVLDPLITHTLPFTKINEGFDLLRTGKSIRSVL 374          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADHL5_ARATH (Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.889e-41
Identity = 90/177 (50.85%), Postives = 115/177 (64.97%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE-PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMPK 541
            G VGL+V +GA+ RGA +IIGVD NPEK E  K FG T+F+N     E  + +VIK +T GG DYSFEC+G   ++T A  S   G G  V LG+ K    V+      L GR + GSLFGG KPK D+P LV+ YLKKE  +D FITH L FE+IN+AF+L+ +GK LR ++ M K
Sbjct:  213 GAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTDFINSTLCGENKISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHLTPVSLGSFDLLRGRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINKAFDLLVQGKSLRCILWMNK 389          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADHL3_ARATH (Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.468e-41
Identity = 83/176 (47.16%), Postives = 114/176 (64.77%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMPK 541
            G+VGL+VA+GA+ARGASRIIGVD N  K EK K  GVT+F+NP D  +PV Q+I+ IT GG DYSFEC G+  ++  A  S   GWG  V +G+      +  H      GR + GS+FGG+KPK+ LP+   + +K    ++ FIT+ L FE IN AF L+++GK LR ++ + K
Sbjct:  215 GSVGLAVAEGARARGASRIIGVDANASKFEKGKLMGVTDFINPKDLTKPVHQMIREITGGGVDYSFECTGNVDVLREAFLSTHVGWGSTVLVGIYPTPRTLPLHPMELFDGRRITGSVFGGFKPKSQLPNFAQQCMKGVVKLEPFITNELPFEKINDAFQLLRDGKSLRCILQISK 390          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.223e-41
Identity = 82/172 (47.67%), Postives = 111/172 (64.53%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLS   G KA GASRIIG+D N +K  KAK  G TE +NP D  +P+Q+V+  +T GG DYSFE IG    +T AL  C D +G +V +GVP    ++  +  +  +GRT KGS+FGGWK K  +P LV  Y++K+  +D  ITH L F+ IN+ F L++ GK +RSV+
Sbjct:  201 GGVGLSTIMGCKAAGASRIIGIDINKDKFAKAKELGATECINPLDCKKPIQEVLSEMTGGGVDYSFEVIGRIDTMTAALACCQDNYGTSVIVGVPPASEKITFNPMMLFTGRTWKGSVFGGWKSKESVPKLVADYMEKKINLDGLITHTLPFDKINEGFELLRTGKSIRSVL 372          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.497e-41
Identity = 84/172 (48.84%), Postives = 113/172 (65.70%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLSV  G KA GASRIIGVD N +K  KAK  G T+ +NP D  +P+ +V+  +T  G DYSFE IG T  +  AL SC   +G++V +GVP    +++    L  SGRT KGS+FGGWK K  +P LV  Y++K+F++D  ITH L F  IN+ F+L++ GK +RSV+
Sbjct:  201 GGVGLSVVMGCKAAGASRIIGVDINKDKFAKAKELGATDCVNPKDFTKPIHEVLMEMTGLGVDYSFEVIGHTETMAAALASCHFNYGVSVIVGVPPAAEKLSFDPMLLFSGRTWKGSVFGGWKSKDSVPKLVADYMEKKFVLDPLITHTLPFHKINEGFDLLRTGKSIRSVL 372          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.180e-41
Identity = 87/177 (49.15%), Postives = 117/177 (66.10%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP-VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMPK 541
            G VGL+VA+GA+ RGA++IIG+DTN +K E  K FG T+F+NP    E  + +VIK +T+GG DYSFEC+G   ++  A  S   G G  V LG+ K    ++      L GR + GSLFGG K K D+P LV+ YLKKE  +D FITH L F++IN+AF L++EGK LR ++ M K
Sbjct:  212 GAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTDFINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGSFDLLRGRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEEGKSLRCILWMDK 388          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41
Identity = 81/174 (46.55%), Postives = 113/174 (64.94%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND--NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGL+V  G K  GA +I G+D NP+K E AK FG T+F+NP D  +   +Q  +  +TDGG DY+FECIG+   + +AL++   GWG +V +GV     E++      + GR  KGS FGGW+  +D+P LV  YLKK+ +VDEFITH L    IN+AF+LM +G+ +RS+I
Sbjct:  204 GAVGLAVGLGCKKAGAGKIYGIDINPDKFELAKKFGFTDFVNPKDVADKGSIQNYLIDLTDGGFDYTFECIGNVNTMRSALEATHKGWGTSVVIGVAGAGQEISTRPFQLVVGRVWKGSAFGGWRSVSDVPKLVEDYLKKDLLVDEFITHELPLSQINEAFDLMHKGESIRSII 377          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADHL2_ARATH (Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.225e-40
Identity = 90/178 (50.56%), Postives = 120/178 (67.42%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP-VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGV-PKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMPK 541
            G VGL+VA+G + RGA++IIGVD NP K E  K FG+T+F+NP    E  + +VI+ +TD GADYSFECIG   ++  A +S   G G  + LG+  K  P     Y L L GRT+ G+LFGG KPK D+P LV+RYLKKE  +++ ITH L FE+IN+AF+L+ EG  +R +I M K
Sbjct:  210 GAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGITDFVNPALCGEKTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQKALPISLGSYDL-LRGRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEINKAFHLLAEGNSIRCIIWMDK 386          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.225e-40
Identity = 84/173 (48.55%), Postives = 115/173 (66.47%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLS   G KA GASRIIG+D N EK  KAK  G TE +NP D  +P+ +V+  +TDG G +YSFE IG T  +T AL SC + +G +V +GVP    ++A    L  +GRT KGS+FGGWK K  +P LV+ ++ K+F++D  ITH + FE IN+ F L++ GK +R+V+
Sbjct:  201 GGVGLSAVMGCKAAGASRIIGIDINKEKFPKAKELGATECVNPLDYKKPINEVLFDMTDGEGVEYSFEVIGRTDTMTAALASCHNNYGTSVIVGVPPSASQIAFDPLLLFTGRTWKGSVFGGWKSKDAVPRLVSDFMGKKFILDPLITHTMPFEKINEGFELLRSGKSIRTVL 373          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.089e-40
Identity = 83/172 (48.26%), Postives = 112/172 (65.12%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLSV  G KA GASRII +D N +K  KAK  G TE +NP D  +P+ +V+  +T  G DYSFE IG    +T AL SC   +G++V +GVP    +++    L  SGRT KGS+FGGWK K  +P LV  Y+KK+F++D  ITH L F  IN+ F+L++ GK +R+V+
Sbjct:  202 GGVGLSVVMGCKAAGASRIIAIDINKDKFAKAKELGATECVNPKDFKKPIHEVLTEMTGKGVDYSFEVIGRIETMTEALASCHYNYGVSVIVGVPPAAQKISFDPMLIFSGRTWKGSVFGGWKSKDAVPKLVADYMKKKFVLDPLITHTLPFTKINEGFDLLRTGKSIRTVL 373          
The following BLAST results are available for this feature:
BLAST of CX290808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
ADH1_CHICK1.447e-4149.42Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADHL5_ARATH1.889e-4150.85Alcohol dehydrogenase-like 5 OS=Arabidopsis thalia... [more]
ADHL3_ARATH2.468e-4147.16Alcohol dehydrogenase-like 3 OS=Arabidopsis thalia... [more]
ADH1_ALLMI3.223e-4147.67Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
ADH1_STRCA5.497e-4148.84Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADHL1_ARATH7.180e-4149.15Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADHX_DROME9.377e-4146.55Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]
ADHL2_ARATH1.225e-4050.56Alcohol dehydrogenase-like 2 OS=Arabidopsis thalia... [more]
ADH1B_UROHA1.225e-4048.55Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH1_COTJA2.089e-4048.26Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]

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Properties
Property NameValue
Genbank descriptionC02027D07SK IF1 Citrus clementina cDNA clone C02027D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290808 ID=CX290808; Name=CX290808; organism=Citrus clementina; type=EST; length=671bp
GGATTCGGCCGAGGGAACTGTAGGCCTTTCTGTTGCACAAGGTGCAAAAG
CCAGAGGAGCGTCTAGAATTATTGGCGTTGACACTAACCCTGAGAAATGT
GAAAAAGCCAAAGCTTTTGGAGTTACAGAGTTTCTCAACCCAAATGATAA
TAATGAACCTGTTCAACAGGTTATTAAGAGAATTACTGATGGAGGGGCAG
ATTACTCGTTTGAATGTATTGGTGATACAGGAATGATAACTACTGCTTTA
CAATCTTGCTGTGATGGATGGGGTCTTGCAGTGACTCTTGGTGTACCAAA
ACTGAAGCCCGAAGTAGCAGCACACTATGGACTGTTTCTAAGTGGAAGAA
CACTGAAAGGCTCTCTATTTGGTGGATGGAAACCTAAAACTGACCTTCCT
TCATTAGTAAACAGGTATCTTAAAAAGGAGTTCATGGTCGATGAGTTTAT
CACCCATAATCTCCTGTTCGAGGATATCAATCAAGCTTTTAATCTCATGA
AAGAAGGGAAATGTTTGCGCAGTGTAATTCATATGCCGAAATAGTTATGT
TTGGGTTATCGAAACCAAGAAATAGAGACCAAACAACACTGTGGTCAGAT
GGATGAATGCACAAGTGATAATGCACAGCATTTGTGGAGATCTATGAGAA
GTATGTAGCTCTGTTCTTTTT
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