CX290808

Overview
NameCX290808
Unique NameCX290808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.335e-38
Identity = 78/172 (45.35%), Postives = 111/172 (64.53%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLS   G KA GA+RII VD N +K  KAK  G TE +NP D  +P+Q+V+K +TDGG D+SFE IG    +  +L  C +  G +V +GVP     ++ +  L L+GRT KG+++GG+K K  +P LV  ++ K+F +D  ITH L FE IN+ F+L+  GK +R+V+
Sbjct:  202 GGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVL 373          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.335e-38
Identity = 78/172 (45.35%), Postives = 111/172 (64.53%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLS   G KA GA+RII VD N +K  KAK  G TE +NP D  +P+Q+V+K +TDGG D+SFE IG    +  +L  C +  G +V +GVP     ++ +  L L+GRT KG+++GG+K K  +P LV  ++ K+F +D  ITH L FE IN+ F+L+  GK +R+V+
Sbjct:  202 GGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVL 373          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 5.689e-38
Identity = 79/172 (45.93%), Postives = 111/172 (64.53%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLSV  G KA GA+RII VD N +K  KAK  G TE +NP D N+P+Q+V+K +TDGG D+SFE IG    +  +L  C +  G +V +GVP     ++ +  L L+GRT KG++ GG+K K  +P LV  ++ K+F +D  ITH L FE IN  F+L+  GK +R+++
Sbjct:  202 GGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYNKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAVLGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINDGFDLLHSGKSIRTIL 373          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.430e-38
Identity = 79/172 (45.93%), Postives = 116/172 (67.44%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLSV  G KA GA+RII VD N +K  KAK  G TE +NP D ++P+Q+V++ +TDGG D+SFE IG    +T++L SC    G++V +GVP     ++ +    L GR+ KG++FGG+K K  +P LV  ++ K+F ++  ITH L FE IN+AF+L++ GK +R+V+
Sbjct:  202 GGVGLSVIIGCKAAGAARIIAVDINKDKFAKAKELGATECINPLDYSKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSSLLSCHASCGVSVIVGVPPNAQSLSVNPMSLLMGRSWKGAIFGGFKSKDSVPKLVTDFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVL 373          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.430e-38
Identity = 77/172 (44.77%), Postives = 112/172 (65.12%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLS   G KA GA+RII VD N +K  KAK  G TE +NP D  +P+Q+V+K +TDGG D+SFE IG    +  +L  C +  G +V +GVP     ++ +  L L+GRT KG+++GG+K +  +P LV  ++ K+F +D  ITH L FE IN+ F+L++ GK +R+V+
Sbjct:  202 GGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAVYGGFKSREGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLRSGKSIRTVL 373          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.704e-38
Identity = 75/173 (43.35%), Postives = 112/173 (64.74%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIH 532
            G +GL+V QGA+   A RI  +DTNP K E AK FG T+ +NPND ++PVQQV+  +T  G D++FECIG+  ++ +AL+S   GWG +V +GV     E++      ++GR  KG+ FGG K +T LP +V   +  +  +  F+TH +  + IN+AF+LM +GK +R+VIH
Sbjct:  196 GGIGLAVVQGARQAKAGRIFAIDTNPSKFELAKQFGATDCINPNDYDKPVQQVLVEMTKWGVDHTFECIGNVNVMRSALESAHRGWGQSVIIGVAGAGKEISTRPFQLVTGRVWKGTAFGGVKGRTQLPGMVEDAMSGKIELAPFVTHTMELDKINEAFDLMHDGKSIRTVIH 368          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.267e-37
Identity = 78/172 (45.35%), Postives = 114/172 (66.28%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLSV  G K  GA++II VD N +K  KAK  G T+ +NP D  +P+Q+V++ +TDGG D+SFE IG    +T+AL SC    G++V +GVP     ++ +    L GRT KG++FGG+K K  +P LV  ++ K+F ++  ITH L FE IN+AF+L++ GK +R+V+
Sbjct:  203 GGVGLSVVIGCKTAGAAKIIAVDINKDKFAKAKELGATDCINPQDYTKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHSACGVSVIVGVPPSAQSLSVNPMSLLLGRTWKGAIFGGFKSKDAVPKLVADFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVL 374          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.816e-37
Identity = 77/172 (44.77%), Postives = 110/172 (63.95%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLS   G KA GA+RII VD N +K  KAK  G TE +NP D  +P+Q+V+K +TDGG D+SFE IG    +  +L  C +  G +V +GVP     ++ +  L L+GRT KG++ GG+K K  +P LV  ++ K+F +D  ITH L FE IN+ F+L+  GK +R+++
Sbjct:  202 GGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTIL 373          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.215e-37
Identity = 73/172 (42.44%), Postives = 112/172 (65.12%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G +GL+V QGA+   A RII +DTNP+K E A+ FG T+ +NPND ++P++ V+  I   G D++FECIG+  ++  AL+S   GWG +V +GV     E++      ++GR  KGS FGG K ++ LP +V   +K +  ++ F+TH +  ++IN AF+LM EGK +R+VI
Sbjct:  196 GAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.215e-37
Identity = 73/172 (42.44%), Postives = 112/172 (65.12%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G +GL+V QGA+   A RII +DTNP+K E A+ FG T+ +NPND ++P++ V+  I   G D++FECIG+  ++  AL+S   GWG +V +GV     E++      ++GR  KGS FGG K ++ LP +V   +K +  ++ F+TH +  ++IN AF+LM EGK +R+VI
Sbjct:  196 GAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
The following BLAST results are available for this feature:
BLAST of CX290808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
ADH1B_PANTR3.335e-3845.35Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
ADH1B_HUMAN3.335e-3845.35Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH1A_PONAB5.689e-3845.93Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
ADH1_PERMA7.430e-3845.93Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH1B_PAPHA7.430e-3844.77Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
FRMA_PASPI9.704e-3843.35S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADH1_RAT1.267e-3745.35Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADH1A_HUMAN4.816e-3744.77Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
FRMA_ECOUT8.215e-3742.44S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL68.215e-3742.44S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC02027D07SK IF1 Citrus clementina cDNA clone C02027D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290808 ID=CX290808; Name=CX290808; organism=Citrus clementina; type=EST; length=671bp
GGATTCGGCCGAGGGAACTGTAGGCCTTTCTGTTGCACAAGGTGCAAAAG
CCAGAGGAGCGTCTAGAATTATTGGCGTTGACACTAACCCTGAGAAATGT
GAAAAAGCCAAAGCTTTTGGAGTTACAGAGTTTCTCAACCCAAATGATAA
TAATGAACCTGTTCAACAGGTTATTAAGAGAATTACTGATGGAGGGGCAG
ATTACTCGTTTGAATGTATTGGTGATACAGGAATGATAACTACTGCTTTA
CAATCTTGCTGTGATGGATGGGGTCTTGCAGTGACTCTTGGTGTACCAAA
ACTGAAGCCCGAAGTAGCAGCACACTATGGACTGTTTCTAAGTGGAAGAA
CACTGAAAGGCTCTCTATTTGGTGGATGGAAACCTAAAACTGACCTTCCT
TCATTAGTAAACAGGTATCTTAAAAAGGAGTTCATGGTCGATGAGTTTAT
CACCCATAATCTCCTGTTCGAGGATATCAATCAAGCTTTTAATCTCATGA
AAGAAGGGAAATGTTTGCGCAGTGTAATTCATATGCCGAAATAGTTATGT
TTGGGTTATCGAAACCAAGAAATAGAGACCAAACAACACTGTGGTCAGAT
GGATGAATGCACAAGTGATAATGCACAGCATTTGTGGAGATCTATGAGAA
GTATGTAGCTCTGTTCTTTTT
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