CX290808

Overview
NameCX290808
Unique NameCX290808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.830e-36
Identity = 72/172 (41.86%), Postives = 112/172 (65.12%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G +GL+V QGA+   A RII +DTNP+K + A+ FG T+ +NPND ++P++ V+  I   G D++FECIG+  ++  AL+S   GWG +V +GV     E++      ++GR  KGS FGG K ++ LP +V   +K +  ++ F+TH +  ++IN AF+LM EGK +R+VI
Sbjct:  196 GAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.830e-36
Identity = 72/172 (41.86%), Postives = 112/172 (65.12%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G +GL+V QGA+   A RII +DTNP+K + A+ FG T+ +NPND ++P++ V+  I   G D++FECIG+  ++  AL+S   GWG +V +GV     E++      ++GR  KGS FGG K ++ LP +V   +K +  ++ F+TH +  ++IN AF+LM EGK +R+VI
Sbjct:  196 GAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.830e-36
Identity = 75/172 (43.60%), Postives = 107/172 (62.21%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLSV  G KA GASRIIG+D N +K +KA A G TE ++P D+ +P+ +V+  +T     Y+FE IG    +  AL SC   +G +V +G P     +     L  +GRT KG +FGGWK + D+P LV  +L+K+F +D+ ITH L F +IN+ F L+  GK +R+V+
Sbjct:  201 GGVGLSVIMGCKAAGASRIIGIDINKDKFQKALAVGATECISPKDSTKPISEVLSDMTGNTVQYTFEVIGRLETMVDALSSCHMNYGTSVVVGAPPSAKMLTYDPMLLFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLDQLITHTLPFNNINEGFELLYSGKSIRTVL 372          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.390e-36
Identity = 74/175 (42.29%), Postives = 113/175 (64.57%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRI---TDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            GTVGLSV QGAK RGAS+II +D N +K +    FG T+F+NP ++    Q +++++   TDGG D++F+C G+T ++  AL++C  GWG ++ +GV     E++      ++GR  KGS FGG K ++++  L+  Y K    V+EFITH   F++INQAF  +  G CLR+V+
Sbjct:  206 GTVGLSVIQGAKLRGASKIIAIDINNKKKQYCSQFGATDFVNPKEDLAKDQTIVEKLIEMTDGGLDFTFDCTGNTKIMRDALEACHKGWGQSIIIGVAAAGEEISTRPFQLVTGRVWKGSAFGGIKGRSEMGGLIKDYQKGALKVEEFITHRRPFKEINQAFEDLHNGDCLRTVL 380          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.186e-35
Identity = 75/172 (43.60%), Postives = 111/172 (64.53%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLS   G KA GA+RII VD N +K  KAK  G TE +NP D ++P+ QV++ +TDGG D+SFE IG    + +AL  C +  G++V +GVP     +     + LSGR+ KG++FGG+K K D+P LV  ++ K+F ++  IT+   F  IN+ F+L++ GK +R+V+
Sbjct:  202 GRVGLSAIIGCKAAGAARIIAVDINKDKFAKAKELGATECVNPQDYDKPIYQVLQEMTDGGVDFSFEVIGRLDTMVSALMCCQESHGVSVIVGVPPNAQSLTMDPMVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINEGFDLLRAGKSIRTVL 373          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH1_GEOBU (Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH1 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.186e-35
Identity = 75/172 (43.60%), Postives = 111/172 (64.53%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLS   G KA GA+RII VD N +K  KAK  G TE +NP D ++P+ QV++ +TDGG D+SFE IG    + +AL  C +  G++V +GVP     +     + LSGR+ KG++FGG+K K D+P LV  ++ K+F ++  IT+   F  IN+ F+L++ GK +R+V+
Sbjct:  202 GRVGLSAIIGCKAAGAARIIAVDINKDKFAKAKELGATECVNPQDYDKPIYQVLQEMTDGGVDFSFEVIGRLDTMVSALMCCQESHGVSVIVGVPPNAQSLTMDPMVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINEGFDLLRAGKSIRTVL 373          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.549e-35
Identity = 77/180 (42.78%), Postives = 108/180 (60.00%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP----VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMPK 541
            G VGL+V  GAKA GA +I+G+D    K E AK FG TE +NP     P     Q  +    DGG DY+FECIG+   +  AL++   GWG++  +GV     E+A      ++GRT KG+ FGGWK    +P LV+ Y+ K+ ++DEFITH    +DIN AF+++ +G+ LRSV+   K
Sbjct:  204 GAVGLAVIMGAKAAGAKKIVGIDLIESKFESAKFFGATECINPKSVELPEGKSFQAWLVEQFDGGFDYTFECIGNVHTMRQALEAAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSVLAFEK 383          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 70/172 (40.70%), Postives = 103/172 (59.88%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLS   G KA GAS+I G+D N +K   AK  G T+ LNP D  +PVQ++I  +T+GG D++ ECIG+  ++  A +S   GWG  V +GV   +  +       + GR +K + FGGWK    +P LV+ Y+ K+F +D  ++H L  + IN AF+LM  GK  R+++
Sbjct:  206 GGVGLSAVMGCKAAGASKIFGIDINKDKFPLAKKLGATDCLNPQDIRKPVQEIIAEMTNGGVDFAIECIGNPDVMKAAFESTTVGWGTCVIVGVAVGEQSIPFSPMQLIMGRKIKATFFGGWKSVKSVPKLVSDYMAKKFDLDALVSHTLPLDKINDAFDLMNAGKSNRTIL 377          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.922e-34
Identity = 72/172 (41.86%), Postives = 105/172 (61.05%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLSV  G KA GASRIIG+D N +K +KA   G TE +NP D  +P+ +V+  +T     Y+FE IG    +  AL SC   +G +V +G P     ++    L  +GRT KG +FGGWK + D+P LV  +L+K+F + + ITH L F +I++ F L+  G+ +R+V+
Sbjct:  201 GGVGLSVVMGCKAAGASRIIGIDINKDKFQKALDVGATECINPRDFTKPISEVLSDMTGNTVQYTFEVIGRLETMVDALSSCHMNYGTSVVVGAPPSAKMLSYDPMLLFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLGQLITHTLPFHNISEGFELLYSGQSIRTVL 372          
BLAST of CX290808 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.922e-34
Identity = 73/172 (42.44%), Postives = 106/172 (61.63%), Query Frame = 2
Query:   14 GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 529
            G VGLSV  G K+ GASRIIG+D N +K EKA A G TE ++P D+ +P+ +V+  +T     Y+FE IG    +  AL SC   +G +V +GVP     +     L  +GRT KG +FGG K + D+P LV  +L K+F +D+ ITH L F+ I++ F L+  G+ +R+V+
Sbjct:  201 GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFELLNSGQSIRTVL 372          
The following BLAST results are available for this feature:
BLAST of CX290808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
FRMA_ECO571.830e-3641.86S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO241.830e-3641.86S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH7_MOUSE1.830e-3643.60Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
FADH_YEAST2.390e-3642.29S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADH1_GEOKN1.186e-3543.60Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
ADH1_GEOBU1.186e-3543.60Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH... [more]
ADHX_CAEEL1.549e-3542.78Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADH4_STRCA1.713e-3440.70Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
ADH7_RAT2.922e-3441.86Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH7_HUMAN2.922e-3442.44Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionC02027D07SK IF1 Citrus clementina cDNA clone C02027D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290808 ID=CX290808; Name=CX290808; organism=Citrus clementina; type=EST; length=671bp
GGATTCGGCCGAGGGAACTGTAGGCCTTTCTGTTGCACAAGGTGCAAAAG
CCAGAGGAGCGTCTAGAATTATTGGCGTTGACACTAACCCTGAGAAATGT
GAAAAAGCCAAAGCTTTTGGAGTTACAGAGTTTCTCAACCCAAATGATAA
TAATGAACCTGTTCAACAGGTTATTAAGAGAATTACTGATGGAGGGGCAG
ATTACTCGTTTGAATGTATTGGTGATACAGGAATGATAACTACTGCTTTA
CAATCTTGCTGTGATGGATGGGGTCTTGCAGTGACTCTTGGTGTACCAAA
ACTGAAGCCCGAAGTAGCAGCACACTATGGACTGTTTCTAAGTGGAAGAA
CACTGAAAGGCTCTCTATTTGGTGGATGGAAACCTAAAACTGACCTTCCT
TCATTAGTAAACAGGTATCTTAAAAAGGAGTTCATGGTCGATGAGTTTAT
CACCCATAATCTCCTGTTCGAGGATATCAATCAAGCTTTTAATCTCATGA
AAGAAGGGAAATGTTTGCGCAGTGTAATTCATATGCCGAAATAGTTATGT
TTGGGTTATCGAAACCAAGAAATAGAGACCAAACAACACTGTGGTCAGAT
GGATGAATGCACAAGTGATAATGCACAGCATTTGTGGAGATCTATGAGAA
GTATGTAGCTCTGTTCTTTTT
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