CX290814

Overview
NameCX290814
Unique NameCX290814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 5.059e-91
Identity = 169/246 (68.70%), Postives = 203/246 (82.52%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD-------MRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+   P IVVGTPGR+ AL R+K LSL+NV+ F+LDECDKML+ +        MRRDVQEIF+ TP DKQVMMFSATLS+EIRP+CKKFM++P+E+YVDD+ KLTLHGL Q+YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+ L+
Sbjct:  136 RELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIGKQAQIAHMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLA 381          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: UAP56_CAEEL (Spliceosome RNA helicase BAT1 homolog OS=Caenorhabditis elegans GN=hel-1 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.472e-90
Identity = 165/236 (69.92%), Postives = 194/236 (82.20%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA+QI  E+ERFS YLP +KVAVF+GG+ IK  ++ L N+CP IVVGTPGR+LALAR   L L  V++F+LDECDKM+   DMRRDVQEI KMTP  KQVMMFSATL KE+R VCK+FMQDPME+YVDDEAKLTLHGL QHY+KL E EKNR+L +LLDAL+FNQVVIFVK+V R   L++LL E NFPSI IH  M+QEERL+RY+ FK+  KRILVATDL GRG+DIERV +
Sbjct:  119 RELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNI 354          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.472e-90
Identity = 163/238 (68.49%), Postives = 192/238 (80.67%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELAYQI +EF RFS ++ +++  VFYGG  I   +++L N+  CP IVVGTPGR +AL RDK L+   V+HF+LDECDKMLE LDMRRDVQEIF+ TPH KQVMMFSATLSK+IR  CKKFMQ P+EIYVDDE KLTLHGL Q Y+KL E EKNRKLNDLLD L+FNQV IFVKSV RA +L+ LL ECNFPSICIHSG+ Q ER++R++ FK   KRILVATD+ GRGID+ERV +
Sbjct:  137 RELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNRKLNDLLDNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNV 374          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_CHAGB (ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.625e-89
Identity = 163/239 (68.20%), Postives = 194/239 (81.17%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELA+QI +E+ RFS Y+PDIK  VFYGG  I+   ++LKN+   P I+VGTPGR+ AL RDK L L NVR F+LDECDKML+ +DMRRDVQEIF+ TP  KQVMMFSATL+ EI+P+C+KFMQ+P E YVD++ KLTLHGL Q+YI L E EKNRKLN+LLD L FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+ L+
Sbjct:  128 RELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVGTPGRLNALVRDKHLRLGNVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLADEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNELLDELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLA 366          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_MAGGR (ATP-dependent RNA helicase SUB2 OS=Magnaporthe grisea GN=SUB2 PE=3 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.350e-88
Identity = 162/239 (67.78%), Postives = 194/239 (81.17%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELA+QI +E+ RFS Y+PDIK  VF+GG  I+   +LLKN+   P I+VGTPGR+ AL RDK L L +VR F+LDECDKML+ +DMRRDVQEIF+ TP  KQVMMFSATLS EI+P+CKKFMQ+P E YVD++ KLTLHGL Q+++ L E EKNRKLN+LLD L FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+ L+
Sbjct:  130 RELAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAELLKNKETHPHIIVGTPGRLNALVRDKFLRLSSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQQYFVALEEKEKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLA 368          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_SCLS1 (ATP-dependent RNA helicase sub2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=sub2 PE=3 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.989e-87
Identity = 156/239 (65.27%), Postives = 196/239 (82.01%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E++RF  ++PD+K+ VFYGGV I    ++LKN    P I+VGTPGR+ AL RDK L L +V+ F+LDECDKML+ +DMRRDVQEIF+ TP  KQVMMFSATLS+E+RP+CKKFMQ+P+EIY+D+E KLTL+GL Q+YIKL E EKNR+LN+LLD L FNQV+IFVKS  RA EL+KLL ECNFPS+ IHSG+SQEER+ R+  FK+ NKRI VATD+ GRGID+ ++ L+
Sbjct:  137 RELAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVEVLKNPETHPHIIVGTPGRLNALVRDKYLRLNSVKVFVLDECDKMLDQIDMRRDVQEIFRATPPQKQVMMFSATLSQEVRPICKKFMQNPLEIYIDNETKLTLYGLQQYYIKLEEREKNRRLNELLDELSFNQVIIFVKSTVRATELDKLLRECNFPSVAIHSGVSQEERIKRFNDFKDFNKRICVATDVFGRGIDVNKINLA 375          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_CANGA (ATP-dependent RNA helicase SUB2 OS=Candida glabrata GN=SUB2 PE=3 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.289e-86
Identity = 158/239 (66.11%), Postives = 193/239 (80.75%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E+ RFS Y+PD++ AVFYGG  I    +LLKN+   P IVV TPGR+ AL RDK + L +V++F++DECDK+LE LDMRRDVQEIF+ TP DKQVMMFSATLS+EIRP+C++F+Q+P+EI+VDDEAKLTLHGL Q+YIKL E EKNRKL  LLD L+FNQV+IFVKS SRA EL KLL   NFP+I +H  M QEER+ RYK FK+  KRI V+TD+ GRGIDIER+ L+
Sbjct:  133 RELAYQIRNEYLRFSKYMPDVRTAVFYGGTPIAKDAELLKNKDTAPHIVVATPGRLKALVRDKMIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTSRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLA 371          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.684e-86
Identity = 158/239 (66.11%), Postives = 189/239 (79.08%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC--PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E+ RF+ +LPD+KV VFYGG  +    +LL N+   P I+VGTPGRI AL RD+ L L N++HF+LDECDKML+  DMR DVQ IF+ TP  KQVMMFSATLSKEIR VCKKFMQ+P+EIYVDDE KLTLHGL Q Y+KL E EKNRKLNDLLD L+FNQV+IFV+S  R  EL+KLL ECNFPS  +HSG+ QEER+ RYK FKE   RI V+TD+ GRGID+ER+ ++
Sbjct:  132 RELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNKDTHPHIIVGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPAHKQVMMFSATLSKEIRAVCKKFMQNPLEIYVDDEKKLTLHGLQQFYVKLDEREKNRKLNDLLDNLEFNQVIIFVRSTLRCTELDKLLRECNFPSTAVHSGIGQEERIKRYKEFKEFQTRICVSTDIFGRGIDVERINVA 370          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.684e-86
Identity = 158/239 (66.11%), Postives = 192/239 (80.33%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E+ RFS Y+PD+K AVFYGG  I    +LLKN+   P IVV TPGR+ AL RDK + L +V++F++DECDK+LE LDMRRDVQ+IF+ TP DKQVMMFSATLS+EIRP+C++F+Q+P+EI+VDDEAKLTLHGL Q+YIKL E EKNRKL  LLD L+FNQV+IFVKS  RA EL KLL E NFP+I +H  M Q ER+ RYK FKE  KRI V+TD+ GRGIDIER+ L+
Sbjct:  136 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSEEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLQENEKNRKLAQLLDDLEFNQVIIFVKSTKRANELTKLLNESNFPAITVHGNMKQAERIARYKAFKEFEKRICVSTDVFGRGIDIERINLA 374          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_YEAST (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae GN=SUB2 PE=1 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.873e-86
Identity = 157/239 (65.69%), Postives = 193/239 (80.75%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E+ RFS Y+PD+K AVFYGG  I    +LLKN+   P IVV TPGR+ AL R+K + L +V++F++DECDK+LE LDMRRDVQEIF+ TP DKQVMMFSATLS+EIRP+C++F+Q+P+EI+VDDEAKLTLHGL Q+YIKL E EKNRKL  LLD L+FNQV+IFVKS +RA EL KLL   NFP+I +H  M QEER+ RYK FK+  KRI V+TD+ GRGIDIER+ L+
Sbjct:  140 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLA 378          
The following BLAST results are available for this feature:
BLAST of CX290814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUB2_ASPFU5.059e-9168.70ATP-dependent RNA helicase sub2 OS=Aspergillus fum... [more]
UAP56_CAEEL1.472e-9069.92Spliceosome RNA helicase BAT1 homolog OS=Caenorhab... [more]
SUB2_CRYNE1.472e-9068.49ATP-dependent RNA helicase SUB2 OS=Cryptococcus ne... [more]
SUB2_CHAGB3.625e-8968.20ATP-dependent RNA helicase SUB2 OS=Chaetomium glob... [more]
SUB2_MAGGR2.350e-8867.78ATP-dependent RNA helicase SUB2 OS=Magnaporthe gri... [more]
SUB2_SCLS11.989e-8765.27ATP-dependent RNA helicase sub2 OS=Sclerotinia scl... [more]
SUB2_CANGA1.289e-8666.11ATP-dependent RNA helicase SUB2 OS=Candida glabrat... [more]
SUB2_PHANO1.684e-8666.11ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria n... [more]
SUB22_VANPO1.684e-8666.11ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozy... [more]
SUB2_YEAST2.873e-8665.69ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionC02027E01SK IF1 Citrus clementina cDNA clone C02027E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290814 ID=CX290814; Name=CX290814; organism=Citrus clementina; type=EST; length=721bp
GAGGAGAGAGTTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTA
CTTACCTGCCTGATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATA
AAAATTCACAAAGATTTGCTGAAAAACGAATGTCCCCAAATTGTTGTCGG
GACTCCTGGAAGGATACTAGCTCTTGCTAGAGATAAAGACCTCTCTTTGA
AGAATGTGAGGCATTTTATCCTTGATGAATGCGATAAGATGCTGGAATCT
CTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAGATGACTCCTCATGA
CAAGCAAGTAATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGCCCAG
TCTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTGGATGACGAG
GCAAAGTTGACTCTTCATGGTCTTGTACAGCACTACATCAAATTGAGTGA
GCTGGAGAAAAATCGGAAGTTGAATGATCTCCTTGATGCATTGGACTTTA
ATCAAGTTGTTATCTTTGTCAAAAGTGTTAGCCGAGCAGCGGAGTTAAAC
AAGTTACTTGTAGAATGCAATTTTCCTTCTATATGCATCCATTCTGGCAT
GTCCCAAGAAGAAAGGTTGACGCGTTACAAAGGTTTCAAGGAGGGGAACA
AGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGGAATTGACATTGAG
CGTGTCACATTGTCATCATTA
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