CX290814

Overview
NameCX290814
Unique NameCX290814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_YEAS7 (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain YJM789) GN=SUB2 PE=3 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.873e-86
Identity = 157/239 (65.69%), Postives = 193/239 (80.75%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E+ RFS Y+PD+K AVFYGG  I    +LLKN+   P IVV TPGR+ AL R+K + L +V++F++DECDK+LE LDMRRDVQEIF+ TP DKQVMMFSATLS+EIRP+C++F+Q+P+EI+VDDEAKLTLHGL Q+YIKL E EKNRKL  LLD L+FNQV+IFVKS +RA EL KLL   NFP+I +H  M QEER+ RYK FK+  KRI V+TD+ GRGIDIER+ L+
Sbjct:  140 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLA 378          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_KLULA (ATP-dependent RNA helicase SUB2 OS=Kluyveromyces lactis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.900e-86
Identity = 157/239 (65.69%), Postives = 191/239 (79.92%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E+ RFS Y+PD+K AVFYGG   K   DLL  K   P I+V TPGR+ AL RDK + L +V++F++DECDK+LE LDMRRDVQ+IF+ TP DKQVMMFSATLS+EIRP+C++F+Q+P+EI+VDDEAKLTLHGL Q+YIKL+E EKNRKL  LLD L+FNQV+IFVKS  RA EL KLL   NFP+I +H  M QEER+ RYK FKE  KRI V+TD+ GRGIDIER+ L+
Sbjct:  131 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLA 369          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB21_VANPO (ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-1 PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 8.358e-86
Identity = 157/239 (65.69%), Postives = 191/239 (79.92%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E+ RFS Y+PD+K AVFYGG  I    +LLKN+   P IVV TPGR+ AL RDK + L +V++F++DECDK+LE LDMRRDVQ+IF+ TP DKQVMMFSATLS+EIRP+C++F+Q+P+EI+VDDEAKLTLHGL Q+Y KL E EKNRKL  LLD L+FNQV+IFVKS  RA EL KLL E NFP+I +H  M Q ER+ RYK FKE  KRI V+TD+ GRGIDIER+ L+
Sbjct:  135 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSEEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYTKLQENEKNRKLAQLLDDLEFNQVIIFVKSTKRANELTKLLNESNFPAITVHGHMKQAERIARYKAFKEFEKRICVSTDVFGRGIDIERINLA 373          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_EMENI (ATP-dependent RNA helicase sub2 OS=Emericella nidulans GN=sub2 PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.092e-85
Identity = 164/256 (64.06%), Postives = 197/256 (76.95%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-----------------LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+   P I+VGTPGR+ AL RDK LSL+NV+ F+LDECDKML+                  LDMRRDVQEIF+ TP DKQVMMFSATLS+++RP+CKKFM++P+E+YVDD+ KLTLHGL Q+YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG        RYK FKE NKRI VATD+ GRGIDIER+ L+
Sbjct:  137 RELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNIIVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIGRSFNPNSQSRSPLTPLDMRRDVQEIFRATPTDKQVMMFSATLSQDVRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTIRANELDKLLRECNFPSIAVHSG--------RYKEFKEFNKRICVATDVFGRGIDIERINLA 384          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_ASHGO (ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii GN=SUB2 PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.426e-85
Identity = 155/239 (64.85%), Postives = 193/239 (80.75%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E+ RFS Y+PD+K AVFYGG + +   +LLKN+   P IVV TPGR+ AL RD ++ L +V++F++DECDK+LE LDMRRDVQ+IF+ TP DKQVMMFSATLS+EIRP+C++F+Q+P+EI+VDDEAKLTLHGL Q+YI+L E EKNRKL  LLD L+FNQV+IFVKS  RA EL KLL   NFP+I +H  M QEER+ RYK FKE  KRI V+TD+ GRGIDIER+ L+
Sbjct:  132 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTDTRKDIELLKNKDTAPHIVVATPGRLKALVRDNNIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIRLEEREKNRKLAQLLDDLEFNQVIIFVKSTLRANELTKLLNASNFPAITVHGHMRQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLA 370          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 5.606e-82
Identity = 150/239 (62.76%), Postives = 187/239 (78.24%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715
            RELAYQI +E+ RFS YLPD+K AVFYGG  I+   +L++N+   P ++V TPGR+ AL RDK L L NV+ F++DECDK+L+ +DMRRDVQEIF++TP  KQVMMFSATLS+EIRP+CKKFM  P+EI VDDE KLTLHGL Q+Y+ + E  KNRKL DLLD L+FNQV+IFVKS SRA  L+++L    FP   +HSG+ QEER+ RYK FKE  KRI V+TD+ GRGIDIER+ L+
Sbjct:  135 RELAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKETSPHVIVATPGRLHALVRDKHLRLGNVKTFVIDECDKVLDQIDMRRDVQEIFRVTPRQKQVMMFSATLSQEIRPICKKFMSSPLEILVDDEGKLTLHGLQQYYVDVEEKSKNRKLGDLLDNLEFNQVIIFVKSTSRANGLSQVLNANGFPCTAVHSGIPQEERIARYKEFKEFKKRICVSTDVFGRGIDIERINLA 373          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.767e-35
Identity = 90/237 (37.97%), Postives = 139/237 (58.65%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA QI       + ++ D+KV    GG +++   + L+    QI+VGTPGR+  +   +     N++ FILDE D+ML S   +  +  IF M P   QV++ SAT+  ++  V  KFM+DP+ I V  + +LTL G+ Q+Y+ + E + K   L DL D++   Q VIF  +  +  EL + L E NF    I+S + Q+ER T  K F+ G+ RIL++TDL+ RGID+++V+L
Sbjct:  100 RELALQIQKVVMALAIHM-DVKVHACIGGTSLQEDSEALRGGA-QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEML-STGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKD-ELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 332          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.770e-35
Identity = 92/237 (38.82%), Postives = 139/237 (58.65%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA QI       + ++ D+KV    GG + +   + L+    QIVVGTPGR+  +   ++    +++ FILDE D+ML S   +  + +IF M P   QV++ SAT+ KE+  V  KFM  P+ I V  +A LTL G+ Q+YI + SE  K   L+DL D++   Q VIF  +  +  EL K L + +F    I+S + Q +R T  K F+ G+ RIL++TDL+ RGID+++V+L
Sbjct:  100 RELALQIQKVVMALALHM-DVKVHACIGGTDPREDAEALRAGA-QIVVGTPGRVFDMIERRNFKTDHIKMFILDEADEMLSS-GFKEQIYKIFTMLPPTTQVVLLSATMPKEVLDVTDKFMNKPVRILVKKDA-LTLEGIQQYYINVESEEYKYDCLSDLYDSISVTQAVIFCNTRRKVEELTKRLTDDSFTVSAIYSDLPQAQRDTIMKEFRTGSSRILISTDLLARGIDVQQVSL 332          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.552e-34
Identity = 91/237 (38.40%), Postives = 138/237 (58.23%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA QI         ++ DIKV    GG +     + L++   QIVVGTPGR+    + +   + N++ FILDE D+ML S   +  + +IF M P   QV++ SAT+ +++  V  KFMQ+P+ I V  + +LTL G+ Q Y+ + E + K   L DL D++   Q VIF  +  +  EL + L   NF    I+S + Q+ER T  K F+ G+ RIL++TDL+ RGID+++V+L
Sbjct:  101 RELALQIQKVVMALGFHM-DIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNIQRRKFKVDNIKMFILDEADEML-STGFKEQIYQIFTMLPPTTQVVLLSATMPRDVLEVTAKFMQNPVRILVKKD-ELTLEGIKQFYVNVEEEQFKYDCLTDLYDSISVTQAVIFCNTRRKVEELTQRLTADNFTVSSIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 332          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.425e-34
Identity = 93/237 (39.24%), Postives = 137/237 (57.81%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA QI       + ++ D+KV    GG +     + LK+   QIVVGTPGR+    +       N++ FILDE D+ML S   R  + +IF M P   QV++ SATL  ++  V  KFM++P+ I V  + +LTL G+ Q YI + E + K   L+DL D++   Q VIF  +  +  EL + L E NF    I+S + Q+ER    K F+ G+ RIL++TDL+ RGID+++V+L
Sbjct:  101 RELALQIQKVVIALAFHM-DVKVHACIGGTSFVEDTEGLKDA--QIVVGTPGRVSDNIQRHRFKTDNIKMFILDEADEMLSS-GFREQIYQIFTMLPPTTQVVLLSATLPGDVLEVTTKFMRNPIRILVKKD-ELTLEGIKQFYINVEEEQYKFDCLSDLYDSISVTQAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSL 332          
The following BLAST results are available for this feature:
BLAST of CX290814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUB2_YEAS72.873e-8665.69ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]
SUB2_KLULA4.900e-8665.69ATP-dependent RNA helicase SUB2 OS=Kluyveromyces l... [more]
SUB21_VANPO8.358e-8665.69ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozy... [more]
SUB2_EMENI1.092e-8564.06ATP-dependent RNA helicase sub2 OS=Emericella nidu... [more]
SUB2_ASHGO1.426e-8564.85ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii... [more]
SUB2_YARLI5.606e-8262.76ATP-dependent RNA helicase SUB2 OS=Yarrowia lipoly... [more]
IF4A_KLULA1.767e-3537.97ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
IF4A_ASHGO8.770e-3538.82ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
IF4A_CANGA2.552e-3438.40ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
IF4A_VANPO7.425e-3439.24ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]

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Properties
Property NameValue
Genbank descriptionC02027E01SK IF1 Citrus clementina cDNA clone C02027E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290814 ID=CX290814; Name=CX290814; organism=Citrus clementina; type=EST; length=721bp
GAGGAGAGAGTTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTA
CTTACCTGCCTGATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATA
AAAATTCACAAAGATTTGCTGAAAAACGAATGTCCCCAAATTGTTGTCGG
GACTCCTGGAAGGATACTAGCTCTTGCTAGAGATAAAGACCTCTCTTTGA
AGAATGTGAGGCATTTTATCCTTGATGAATGCGATAAGATGCTGGAATCT
CTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAGATGACTCCTCATGA
CAAGCAAGTAATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGCCCAG
TCTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTGGATGACGAG
GCAAAGTTGACTCTTCATGGTCTTGTACAGCACTACATCAAATTGAGTGA
GCTGGAGAAAAATCGGAAGTTGAATGATCTCCTTGATGCATTGGACTTTA
ATCAAGTTGTTATCTTTGTCAAAAGTGTTAGCCGAGCAGCGGAGTTAAAC
AAGTTACTTGTAGAATGCAATTTTCCTTCTATATGCATCCATTCTGGCAT
GTCCCAAGAAGAAAGGTTGACGCGTTACAAAGGTTTCAAGGAGGGGAACA
AGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGGAATTGACATTGAG
CGTGTCACATTGTCATCATTA
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