CX290814

Overview
NameCX290814
Unique NameCX290814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 76/235 (32.34%), Postives = 136/235 (57.87%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 706
            RELAYQI  +FE   + +  +K AV  GG+++ + + +   + P I+V TPGR+L  L   K  SL+++++ ++DE D++L+ LD    + +I K+ P +++  +FSAT+S ++  + +  ++DP+ + +      T+  L+Q+YI +  + K+  L  LL+       +IF ++V+    +  LL    F +I +H  +SQ  RL     F+ G++ ILVATD+  RG+DI  V
Sbjct:  138 RELAYQISQQFEALGSVIR-VKCAVIVGGMDM-VPQSIALGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLD-LDFGPILDKILKVLPRERRTYLFSATISSKVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPLIHKDTYLIYLLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSV 369          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 83/237 (35.02%), Postives = 136/237 (57.38%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA QI         ++  I+     GG++++     L++  PQ+VVGTPGR+  + + + L   +++ F+LDE D+ML S      + +IF+  P   QV++ SAT+ +++  V  KFM+DP+ I V  +A+LTL G+ Q YI + + E K   L+DL + +   Q VIF  +  +   L   L   +F    +H  M Q++R    K F+ G+ R+L+ATDL+ RGID+++V+L
Sbjct:  103 RELAQQIQKVVVAIGDFM-SIECHACIGGISVREDMKALQDG-PQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEML-SHGFTEQIYDIFQFLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVK-KAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSL 335          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.683e-31
Identity = 86/237 (36.29%), Postives = 134/237 (56.54%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA QI         ++ +I+     GG  ++   + L+ E PQIVVGTPGRI  + + + L    ++ FILDE D+ML S      + +IF++ P   QV++ SAT+ +++  V  KFM+DP+ I V  + +LTL G+ Q YI + + E K   L+DL + +   Q VIF  +  +   L   L   +F    +H  M Q +R    K F+ G+ R+L+ATDL+ RGID+++V+L
Sbjct:  126 RELAQQIQKVVIAIGDFM-NIQCHACIGGTAVRDDMNALR-EGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQ-ELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSL 358          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.003e-30
Identity = 81/237 (34.18%), Postives = 132/237 (55.70%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA QI         YL ++ +    GG +++  +  L+     +VVGTPGR+  +     L    ++ F+LDE D+ML S   +  + E+F+  P D QV++ SAT+  E+  V  +FM++P+ I V  + +LTL G+ Q YI + + E K   L DL + ++  Q VIF  +  +   L + + E  F   C+H  M Q ER T  + F+ G+ R+L+ TD++ RGID+++V+L
Sbjct:  107 RELAQQIQKVMSALGEYL-NVNILPCIGGTSVRDDQRKLEAGI-HVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEML-SRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKD-ELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSL 339          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 1.003e-30
Identity = 78/236 (33.05%), Postives = 124/236 (52.54%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA Q+      FS ++  + V   YGG    +    L+ + PQIVVGTPGR+L   +   L L  +   +LDE D+ML  +    DV+ I    P   Q  +FSAT+ + IR + ++FM++P E+ +      T   + Q Y     + KN  L   L+A DF+  +IFV++ +   E+ + L    + S  ++  M+Q  R    +  K+G   IL+ATD+  RG+D+ER++L
Sbjct:   84 RELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGLDVERISL 316          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 83/237 (35.02%), Postives = 133/237 (56.12%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA QI         ++  ++     GG N++     L++  PQ+VVGTPGR+  + + + L    ++ FILDE D+ML S      + +IF++ P   QV++ SAT+ +++  V  KFM+DP+ I V  + +LTL G+ Q YI + + E K   L+DL + +   Q VIF  +  +   L   L   +F    +H  M Q +R    K F+ G+ R+L+ATDL+ RGID+++V+L
Sbjct:  103 RELAQQIQKVVVAIGDFM-SLECHACIGGTNVREDMKALQDG-PQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQ-ELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSL 335          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 78/236 (33.05%), Postives = 125/236 (52.97%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA Q+      FS ++  + V   YGG    +    L+ + PQIVVGTPGR+L   +   L L  +   +LDE D+ML  +    DV+ I    P   Q  +FSAT+ + IR + ++FM++P E+ +      T   + Q Y  +  + KN  L   L+A DF+  +IFV++ +   E+ + L    + S  ++  M+Q  R    +  K+G   IL+ATD+  RG+D+ER++L
Sbjct:   84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 78/236 (33.05%), Postives = 125/236 (52.97%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA Q+      FS ++  + V   YGG    +    L+ + PQIVVGTPGR+L   +   L L  +   +LDE D+ML  +    DV+ I    P   Q  +FSAT+ + IR + ++FM++P E+ +      T   + Q Y  +  + KN  L   L+A DF+  +IFV++ +   E+ + L    + S  ++  M+Q  R    +  K+G   IL+ATD+  RG+D+ER++L
Sbjct:   84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 78/236 (33.05%), Postives = 125/236 (52.97%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA Q+      FS ++  + V   YGG    +    L+ + PQIVVGTPGR+L   +   L L  +   +LDE D+ML  +    DV+ I    P   Q  +FSAT+ + IR + ++FM++P E+ +      T   + Q Y  +  + KN  L   L+A DF+  +IFV++ +   E+ + L    + S  ++  M+Q  R    +  K+G   IL+ATD+  RG+D+ER++L
Sbjct:   84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316          
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 78/236 (33.05%), Postives = 125/236 (52.97%), Query Frame = 2
Query:    5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712
            RELA Q+      FS ++  + V   YGG    +    L+ + PQIVVGTPGR+L   +   L L  +   +LDE D+ML  +    DV+ I    P   Q  +FSAT+ + IR + ++FM++P E+ +      T   + Q Y  +  + KN  L   L+A DF+  +IFV++ +   E+ + L    + S  ++  M+Q  R    +  K+G   IL+ATD+  RG+D+ER++L
Sbjct:   84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316          
The following BLAST results are available for this feature:
BLAST of CX290814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_BOTFB4.504e-3132.34ATP-dependent rRNA helicase rrp3 OS=Botryotinia fu... [more]
IF4A_AJECN4.504e-3135.02ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
IF4A_EMENI7.683e-3136.29ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_CAEEL1.003e-3034.18Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
DEAD_KLEPN1.003e-3033.05Cold-shock DEAD box protein A OS=Klebsiella pneumo... [more]
IF4A_ASPCL1.311e-3035.02ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
DEAD_SHIFL1.311e-3033.05Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_ECOLI1.311e-3033.05Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL61.311e-3033.05Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECO571.311e-3033.05Cold-shock DEAD box protein A OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionC02027E01SK IF1 Citrus clementina cDNA clone C02027E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290814 ID=CX290814; Name=CX290814; organism=Citrus clementina; type=EST; length=721bp
GAGGAGAGAGTTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTA
CTTACCTGCCTGATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATA
AAAATTCACAAAGATTTGCTGAAAAACGAATGTCCCCAAATTGTTGTCGG
GACTCCTGGAAGGATACTAGCTCTTGCTAGAGATAAAGACCTCTCTTTGA
AGAATGTGAGGCATTTTATCCTTGATGAATGCGATAAGATGCTGGAATCT
CTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAGATGACTCCTCATGA
CAAGCAAGTAATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGCCCAG
TCTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTGGATGACGAG
GCAAAGTTGACTCTTCATGGTCTTGTACAGCACTACATCAAATTGAGTGA
GCTGGAGAAAAATCGGAAGTTGAATGATCTCCTTGATGCATTGGACTTTA
ATCAAGTTGTTATCTTTGTCAAAAGTGTTAGCCGAGCAGCGGAGTTAAAC
AAGTTACTTGTAGAATGCAATTTTCCTTCTATATGCATCCATTCTGGCAT
GTCCCAAGAAGAAAGGTTGACGCGTTACAAAGGTTTCAAGGAGGGGAACA
AGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGGAATTGACATTGAG
CGTGTCACATTGTCATCATTA
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