CX290839

Overview
NameCX290839
Unique NameCX290839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX2_BOVIN (Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.061e-59
Identity = 114/174 (65.52%), Postives = 132/174 (75.86%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            VG  AP+F A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR  EF KLN E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+ +S  YGVL  D+GIA RGLF+ID +GV++  TIN+L +GRSVDE LR +QA QY  E+  EVCPAGW PG
Sbjct:    9 VGKPAPEFQATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIVAFSDRAAEFHKLNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDEGIAYRGLFVIDGKGVLRQVTINDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWTPG 180          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX2_RAT (Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.811e-59
Identity = 112/174 (64.37%), Postives = 133/174 (76.44%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G  APDF   AV D  F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSD   +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+TKS+S++YGVL  D+GIA RGLFIID +GV++  T+N+L +GRSVDE LR +QA QY  E+  EVCPAGWKPG
Sbjct:    8 IGKPAPDFTGTAVVDGAFKEIKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSDHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAYRGLFIIDAKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPG 179          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX2_CRIGR (Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 4.034e-59
Identity = 111/174 (63.79%), Postives = 134/174 (77.01%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+   +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+S+S++YGVL  D+GIA RGLFIID +G+++  T+N+L +GRSVDE LR +QA QY  E+  EVCPAGWKPG
Sbjct:    8 IGKPAPDFTATAVVDGAFKEVKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSNHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRSLSENYGVLKTDEGIAYRGLFIIDAKGILRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPG 179          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX2_MACFA (Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 227.254 bits (578), Expect = 6.880e-59
Identity = 112/174 (64.37%), Postives = 133/174 (76.44%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+ +S+ YGVL  D+GIA RGLFIID +GV++  T+N+L +GRSVDE LR +QA QY  E+  EVCPAGWKPG
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPG 179          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX2_HUMAN (Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5)

HSP 1 Score: 227.254 bits (578), Expect = 6.880e-59
Identity = 112/174 (64.37%), Postives = 133/174 (76.44%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+ +S+ YGVL  D+GIA RGLFIID +GV++  T+N+L +GRSVDE LR +QA QY  E+  EVCPAGWKPG
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPG 179          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX1_CHICK (Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.098e-56
Identity = 107/175 (61.14%), Postives = 135/175 (77.14%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G  APDF A AV  D +F ++KLSDY GK YV+ FFYPLDFTFVCPTEI A+SDR  EF+K+N EI+G S DS F HLAW+ T +K GGLG +K PL++D  + I+K YGVL  D+GIA RGLFIID++G+++  TIN+L +GRSVDETLR +QA Q+  ++  EVCPAGWKPG
Sbjct:    8 IGKPAPDFTATAVMPDGQFKDIKLSDYRGK-YVVFFFYPLDFTFVCPTEIIAYSDRADEFKKINCEIIGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIAYRGLFIIDEKGILRQITINDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPG 180          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX_ASCSU (Peroxiredoxin OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.299e-56
Identity = 104/175 (59.43%), Postives = 132/175 (75.43%), Query Frame = 1
Query:  190 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            ++G  AP+F A AV D +F ++ LSDY GK YV+LFFYP+DFTFVCPTEI AFS+   EF+KL  E+L  STDS FSHLAW+ T RK GGLG++K P+I+D    IS+ YGVL  D GIA RGLFIID +G+++  T+N+L +GRSV ETLR +QA Q+V ++  EVCPAGW PG
Sbjct:    5 MIGKPAPEFTATAVVDGDFKSISLSDYKGK-YVVLFFYPMDFTFVCPTEIIAFSEHVGEFKKLGVEVLAASTDSQFSHLAWINTPRKQGGLGEMKIPIISDNNHQISRDYGVLKEDDGIAYRGLFIIDPKGILRQITVNDLPVGRSVTETLRLVQAFQFVDKH-GEVCPAGWTPG 177          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX1_GECJA (Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 104/175 (59.43%), Postives = 131/175 (74.86%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G  APDF A AV  D +F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR  EF K+N E++G S DS F HLAW+ T +K GGLG +  PL++D  + I+K YG+L  D+GI+ RGLFIID +G ++  TIN+L +GRSVDETLR +QA Q+  ++  EVCPAGW+PG
Sbjct:    8 IGKLAPDFQATAVMPDGQFKEIKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSDRSEEFRKINCEVIGASVDSHFCHLAWINTPKKQGGLGSMHIPLVSDTKRVIAKDYGILKEDEGISYRGLFIIDDKGTLRQITINDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWQPG 180          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: TDX_CYNPY (Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 105/175 (60.00%), Postives = 131/175 (74.86%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQ-EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G  AP+F A+AV    EF ++KL+DY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF K+N E++  S DS F HLAW  T RK GGLG +K PL+AD  ++IS+ YGVL  D+GI+ RGLFIID +G+++  TIN+L +GRSVDETLR +QA Q+  +   EVCPAGWKPG
Sbjct:    8 IGKPAPEFQAKAVMPGGEFKDIKLADYRGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFRKINCELIAASVDSHFCHLAWTNTSRKEGGLGSMKIPLVADTKRTISQDYGVLKEDEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQHT-DKFGEVCPAGWKPG 180          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX1_HUMAN (Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.991e-54
Identity = 102/175 (58.29%), Postives = 134/175 (76.57%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G+ AP+F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAWV T +K GGLG +  PL++D  ++I++ YGVL  D+GI+ RGLFIID +G+++  T+N+L +GRSVDETLR +QA Q+  ++  EVCPAGWKPG
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPG 180          
The following BLAST results are available for this feature:
BLAST of CX290839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRDX2_BOVIN1.061e-5965.52Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1[more]
PRDX2_RAT1.811e-5964.37Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1... [more]
PRDX2_CRIGR4.034e-5963.79Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=... [more]
PRDX2_MACFA6.880e-5964.37Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE... [more]
PRDX2_HUMAN6.880e-5964.37Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5[more]
PRDX1_CHICK1.098e-5661.14Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=... [more]
PRDX_ASCSU9.299e-5659.43Peroxiredoxin OS=Ascaris suum PE=2 SV=1[more]
PRDX1_GECJA6.028e-5559.43Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 S... [more]
TDX_CYNPY1.343e-5460.00Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1[more]
PRDX1_HUMAN2.991e-5458.29Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02027G03SK IF1 Citrus clementina cDNA clone C02027G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290839 ID=CX290839; Name=CX290839; organism=Citrus clementina; type=EST; length=733bp
GAGGATTTCCTCTAACCCAAGGCTTTCTCTTCTTCCTCAATCTCCCCTTC
TCAAAACCTAACCATTCCCCGCTCCTTCTCCGGCCTCCGCAATCCCCTCC
AGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCCCGCGGGTCCCGTTCTCGC
AAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACCACCATTGGTGGGCAA
CACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTTCATCA
ATGTCAAGCTTTCGGATTACATTGGGAAGAAATATGTGATTCTCTTTTTC
TACCCGTTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCTTTCAG
CGACCGATATACTGAATTTGAGAAGCTAAACACAGAGATATTGGGTGTCT
CAACCGACAGTGTGTTTTCACACTTGGCATGGGTCCAAACAGACAGAAAG
TCAGGTGGTCTTGGTGATTTGAAGTACCCACTAATTGCTGATATCACCAA
ATCAATTTCAAAATCCTATGGTGTTCTGATCCCTGATCAGGGAATTGCAT
TGAGAGGACTCTTTATTATTGACAAAGAAGGAGTCATCCAGCACTCAACC
ATTAACAACCTTGCCATTGGTAGGAGTGTTGACGAGACACTGAGAACACT
TCAGGCCTTGCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAG
GATGGAAGCCCGGGGACAAATCATGAAGCCAGA
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