CX290839

Overview
NameCX290839
Unique NameCX290839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX4_HUMAN (Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.664e-54
Identity = 99/177 (55.93%), Postives = 129/177 (72.88%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            +   AP +   AV D EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+T  ISK YGV + D G  LRGLFIID +G+++  T+N+L +GRSVDETLR +QA QY  ++  EVCPAGWKPG ++
Sbjct:   81 ISKPAPYWEGTAVIDGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPGSET 255          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX1_MYOLU (Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.664e-54
Identity = 100/175 (57.14%), Postives = 134/175 (76.57%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G+ AP+F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+K+N +++G S DS F HLAW+ T +K GGLG +  PL++D  ++I++ YGVL  D+GI+ RGLFIID +G+++  T+N+L +GRSVDETLR +QA Q+  ++  EVCPAGWKPG
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKINCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPG 180          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX1_BOVIN (Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.664e-54
Identity = 102/175 (58.29%), Postives = 133/175 (76.00%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G+ AP F A AV  D +F ++ L+DY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PLI+D  ++I++ YGVL  D+GI+ RGLFIID +G+++  TIN+L +GRSVDETLR +QA Q+  ++  EVCPAGWKPG
Sbjct:    8 IGHRAPQFKATAVMPDGQFKDISLADYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPG 180          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX2_PONAB (Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 1.485e-53
Identity = 103/167 (61.68%), Postives = 125/167 (74.85%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVC 693
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+ +S+ YGVL  D+GIA RGLFIID +GV++  T+N+L +GRSVDE LR +QA QY  E+ +  C
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFHKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEGPC 173          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX1_RAT (Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.939e-53
Identity = 101/175 (57.71%), Postives = 132/175 (75.43%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G+ AP F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PL++D  ++I++ YGVL  D+GI+ RGLFIID +G+++  TIN+L +GRSVDE LR +QA Q+  ++  EVCPAGWKPG
Sbjct:    8 IGHPAPSFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKH-GEVCPAGWKPG 180          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX3_PONAB (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Pongo abelii GN=PRDX3 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.532e-53
Identity = 106/195 (54.36%), Postives = 136/195 (69.74%), Query Frame = 1
Query:  127 LSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKP 711
            L  GS   K F   +S   P +  + AP F   AV + EF ++ L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D+TK IS+ YGVL+   G+ALRGLFIID  GVI+H ++N+L +GRSV+ETLR ++A QYV E   EVCPA W P
Sbjct:   44 LCSGSSQAKLFSTSSSYHAPAVTQH-APYFKGTAVVNGEFKDLSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYV-ETHGEVCPANWTP 235          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX3_HUMAN (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens GN=PRDX3 PE=1 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 2.532e-53
Identity = 106/195 (54.36%), Postives = 136/195 (69.74%), Query Frame = 1
Query:  127 LSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKP 711
            L  GS   K F   +S   P +  + AP F   AV + EF ++ L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D+TK IS+ YGVL+   G+ALRGLFIID  GVI+H ++N+L +GRSV+ETLR ++A QYV E   EVCPA W P
Sbjct:   44 LCSGSSQAKLFSTSSSCHAPAVTQH-APYFKGTAVVNGEFKDLSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYV-ETHGEVCPANWTP 235          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX4_RAT (Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.642e-53
Identity = 98/177 (55.37%), Postives = 129/177 (72.88%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+   ISK YGV + D G  LRGLFIID +GV++  T+N+L +GRSVDETLR +QA QY  ++  EVCPAGWKPG ++
Sbjct:   83 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPGSET 257          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX4_MOUSE (Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.642e-53
Identity = 98/177 (55.37%), Postives = 129/177 (72.88%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+   ISK YGV + D G  LRGLFIID +GV++  T+N+L +GRSVDETLR +QA QY  ++  EVCPAGWKPG ++
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPGSET 258          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX4_BOVIN (Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.642e-53
Identity = 98/177 (55.37%), Postives = 127/177 (71.75%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T R+ GGLG +  PL+AD+   ISK YGV + D G  LRGLFIID +G+++  T+N+L +GRSVDETLR +QA QY  ++  EVCPAGWKPG ++
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPGSET 258          
The following BLAST results are available for this feature:
BLAST of CX290839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRDX4_HUMAN6.664e-5455.93Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1[more]
PRDX1_MYOLU6.664e-5457.14Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 ... [more]
PRDX1_BOVIN6.664e-5458.29Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1[more]
PRDX2_PONAB1.485e-5361.68Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3[more]
PRDX1_RAT1.939e-5357.71Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1... [more]
PRDX3_PONAB2.532e-5354.36Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_HUMAN2.532e-5354.36Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX4_RAT5.642e-5355.37Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2... [more]
PRDX4_MOUSE5.642e-5355.37Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1[more]
PRDX4_BOVIN5.642e-5355.37Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02027G03SK IF1 Citrus clementina cDNA clone C02027G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290839 ID=CX290839; Name=CX290839; organism=Citrus clementina; type=EST; length=733bp
GAGGATTTCCTCTAACCCAAGGCTTTCTCTTCTTCCTCAATCTCCCCTTC
TCAAAACCTAACCATTCCCCGCTCCTTCTCCGGCCTCCGCAATCCCCTCC
AGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCCCGCGGGTCCCGTTCTCGC
AAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACCACCATTGGTGGGCAA
CACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTTCATCA
ATGTCAAGCTTTCGGATTACATTGGGAAGAAATATGTGATTCTCTTTTTC
TACCCGTTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCTTTCAG
CGACCGATATACTGAATTTGAGAAGCTAAACACAGAGATATTGGGTGTCT
CAACCGACAGTGTGTTTTCACACTTGGCATGGGTCCAAACAGACAGAAAG
TCAGGTGGTCTTGGTGATTTGAAGTACCCACTAATTGCTGATATCACCAA
ATCAATTTCAAAATCCTATGGTGTTCTGATCCCTGATCAGGGAATTGCAT
TGAGAGGACTCTTTATTATTGACAAAGAAGGAGTCATCCAGCACTCAACC
ATTAACAACCTTGCCATTGGTAGGAGTGTTGACGAGACACTGAGAACACT
TCAGGCCTTGCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAG
GATGGAAGCCCGGGGACAAATCATGAAGCCAGA
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