CX290841

Overview
NameCX290841
Unique NameCX290841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.397e-36
Identity = 81/192 (42.19%), Postives = 110/192 (57.29%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA----KRLPRVQPAPNPSGMVLMDRPGERTASASCC 691
            KL+L+GD G GKS L+LRF    +++   STIG  F  +T+  +  T+K +IWDTAGQER+ ++   YYRGA   IIVYD+T+Q SF   K+W+ E+    + N+   L GNK+DL   + V  E A+A+A E G+ FMETSAK ATNV   F  +A     R+     A N     +  R        SCC
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQPVNQKTSCC 201          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.397e-36
Identity = 71/162 (43.83%), Postives = 105/162 (64.81%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 613
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   + NMV+ L GNK+DL   R V  EE +A+A+E+GL FMETSAKTA NV + +   AK + R
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYR 169          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.661e-36
Identity = 79/190 (41.58%), Postives = 120/190 (63.16%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN--------DIFYEIAKRLPRVQPAPNPSGMVLMDRPGERT 673
            K+VL+GD G GKS+++ RF + +F    +STIG  F ++TL V   TVK +IWDTAGQERY ++   YYRGA  A++ YDIT + +F+  ++W++EL+   + N+V+ LAGNK+DL   R V+ ++ QA  ++ GL F+ETSA  A NV+        DI++ I+K+    Q A   + +     PG+ T
Sbjct:   14 KMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTAL-----PGQGT 198          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 71/158 (44.94%), Postives = 104/158 (65.82%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 601
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + VN+  +K +IWDTAGQER+ ++   YYRGAA A++VYDIT + ++     W+ + +   NPN V+ L GNK DL   R VT EEA A+A++NGL F+E+SAKT  NV + F   AK
Sbjct:   10 KYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAK 167          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35
Identity = 83/197 (42.13%), Postives = 114/197 (57.87%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAP------NPSGMVLM-DRP--GERTASASCC 691
            KL+L+GD   GKS  +LRF    +++   STIG  F  +T+ V   TVK +IWDTAGQER+ ++   YYRGA   IIVYDIT+  SF   K+W+ E+    N ++   L GNK DL + R V    AQAYAQE G+ F+ETSAK + NV + F  ++  + + +          PS +V M  RP   E+  S+ CC
Sbjct:   10 KLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCC 206          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RABJ_DICDI (Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35
Identity = 75/164 (45.73%), Postives = 109/164 (66.46%), Query Frame = 2
Query:  116 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            ++ +K+VLLG    GK++L LR+V G F +   STIGA+F ++T+ +    +K+ IWD+AGQ+R+ SLA +YYRGA  AI+V+DIT Q +F+  K WV+EL+A     ++M L GNK DL   R+V +E A+ YA E    ++ETSAK    V  +F EI K+L
Sbjct:    7 SMESKVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAGQDRFRSLATLYYRGACVAILVFDITQQKTFDIVKGWVEELKANIQEEIIMVLCGNKIDLEQNRQVKSETAKLYADEINAMYVETSAKENEGVEGMFLEIGKKL 170          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35
Identity = 79/177 (44.63%), Postives = 114/177 (64.41%), Query Frame = 2
Query:   80 RSEHPMATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            R+  P A      +  KLVLLG    GKSSL LR+VK  F      T+G AFF++ + V   ++K EIWDTAGQE+YHS+  +Y+RGA AA++VYDIT + SF +A++W+++L+ + +P  V+  L GNK DL   R+VT +E + +A    L FMETSAK    V+++F  +A+ L
Sbjct:    6 RTPQPRAAPSQPRV-FKLVLLGSGSVGKSSLALRYVKNDFKSILP-TVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVLVMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQEL 180          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 75/192 (39.06%), Postives = 117/192 (60.94%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL----PRVQPAPNPSGMVLMDRPGERTASASCC 691
            KL+L+GD G GKS L+LRF + QF     +TIG  F  +T+ + +  VK ++WDTAGQER+ ++   YYRGA   ++VYD+T++ SF   + W Q +Q+  N  + + L GNK DL + R V+ E+ QA A + G+ F+E S+KT  NV + FY +A R+     + +   + SG + +   GE  +++ CC
Sbjct:   13 KLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKGNESGSGGINI-AEGEENSASKCC 203          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 67/160 (41.88%), Postives = 105/160 (65.62%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + +++  +K +IWDTAGQE + S+   YYRG+A A++VYDIT + +F     W+++ ++  N NM + L GNK+D+   R V+ EE + +A ENGL F+ETSAKTA+NV + F   A ++
Sbjct:    7 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKI 166          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB17_MOUSE (Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 75/171 (43.86%), Postives = 115/171 (67.25%), Query Frame = 2
Query:   98 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            +T   +   +KLVLLG    GK+SL LR++K  F      T+G AFF++ L +  +++K EIWDTAGQE+Y S+  +Y+RGA AA++VYDIT + SF +A++W+++L+ +  P  +V+ L GNK DL + R+VT +E + +A+   L FMETSAK    V++IF  +A+ L
Sbjct:   11 STASGQPYVSKLVLLGSSSVGKTSLALRYMKQDFSNVLP-TVGCAFFTKVLDLGSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEFQPGEVVVMLVGNKTDLGEEREVTFQEGKEFAESKSLLFMETSAKLNYQVSEIFNTVAQEL 180          
The following BLAST results are available for this feature:
BLAST of CX290841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTM2_MAIZE7.397e-3642.19GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB2B_MOUSE7.397e-3643.83Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RB11A_TOBAC9.661e-3641.58Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAB14_DICDI1.262e-3544.94Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
YPTM1_MAIZE2.152e-3542.13GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RABJ_DICDI2.152e-3545.73Ras-related protein RabJ OS=Dictyostelium discoide... [more]
RAB17_HUMAN2.152e-3544.63Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]
RYL1_YARLI3.671e-3539.06Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB2A_DICDI3.671e-3541.88Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB17_MOUSE3.671e-3543.86Ras-related protein Rab-17 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionC02027G05SK IF1 Citrus clementina cDNA clone C02027G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290841 ID=CX290841; Name=CX290841; organism=Citrus clementina; type=EST; length=693bp
GAGGCTCTTCGTCACCCTTCCATTTTTTTTTTTCCTTAATTTCGTCTCTA
ACCCTGCGATCCAATTTTGATCCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGTCA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTATGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTC
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