CX290841
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3) HSP 1 Score: 144.05 bits (362), Expect = 6.923e-34 Identity = 77/193 (39.90%), Postives = 109/193 (56.48%), Query Frame = 2 Query: 128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQPAPNPSGM----VLMDRPGERTASASCC 691 KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL + V A+ +A G+ F+ETSAK ATNV F +A + R+ P G V + + + CC Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 205
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3) HSP 1 Score: 144.05 bits (362), Expect = 6.923e-34 Identity = 77/193 (39.90%), Postives = 109/193 (56.48%), Query Frame = 2 Query: 128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQPAPNPSGM----VLMDRPGERTASASCC 691 KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL + V A+ +A G+ F+ETSAK ATNV F +A + R+ P G V + + + CC Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 205
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3) HSP 1 Score: 144.05 bits (362), Expect = 6.923e-34 Identity = 77/193 (39.90%), Postives = 109/193 (56.48%), Query Frame = 2 Query: 128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQPAPNPSGM----VLMDRPGERTASASCC 691 KL+L+GD G GKS L+LRF + E STIG F +T+ ++ T+K +IWDTAGQER+ ++ YYRGA I+VYD+T+Q SF K+W+QE+ + N+ L GNK DL + V A+ +A G+ F+ETSAK ATNV F +A + R+ P G V + + + CC Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 205
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 6.923e-34 Identity = 76/199 (38.19%), Postives = 114/199 (57.29%), Query Frame = 2 Query: 128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF----YEIAKRLPRVQPAPNP-------SGMVLMDRPGERTASASCC 691 K+V++GD GKS+L+ R+ + +F ++TIG F +Q++ ++ VK +IWDTAGQER+ ++ YYRGA A++VYDIT ++FE +W+ EL + + L GNK DL R V+ EE ++ A+ GLFFMETSA +TNV F EI + R Q + + + L+ E T + SCC Sbjct: 14 KIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRVSLVKNENEGTKTFSCC 212
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 6.923e-34 Identity = 68/160 (42.50%), Postives = 102/160 (63.75%), Query Frame = 2 Query: 107 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 586 G + K+V++GD GKS+L+ R+ + +F ++TIG F +Q++ + VK +IWDTAGQER+ ++ YYRGA A++VYDIT + +FE +W+ EL+ + + L GNK DL + R V+ EE +A A+E GLFF+ETSA +TNV F Sbjct: 7 GREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAF 166
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34 Identity = 70/160 (43.75%), Postives = 103/160 (64.38%), Query Frame = 2 Query: 128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607 K +++G G GKS L+ +F++ +F + TIG F S+ + V TVK +IWDTAGQER+ S+ YYRGAA A++VYDIT++ ++ W+ + + +PN+V+ L GNK DL R+VT EA +AQEN L F+ETSA T NV + F + A+ + Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 169
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34 Identity = 70/160 (43.75%), Postives = 103/160 (64.38%), Query Frame = 2 Query: 128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607 K +++G G GKS L+ +F++ +F + TIG F S+ + V TVK +IWDTAGQER+ S+ YYRGAA A++VYDIT++ ++ W+ + + +PN+V+ L GNK DL R+VT EA +AQEN L F+ETSA T NV + F + A+ + Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 169
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34 Identity = 70/160 (43.75%), Postives = 103/160 (64.38%), Query Frame = 2 Query: 128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607 K +++G G GKS L+ +F++ +F + TIG F S+ + V TVK +IWDTAGQER+ S+ YYRGAA A++VYDIT++ ++ W+ + + +PN+V+ L GNK DL R+VT EA +AQEN L F+ETSA T NV + F + A+ + Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 169
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34 Identity = 70/160 (43.75%), Postives = 103/160 (64.38%), Query Frame = 2 Query: 128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607 K +++G G GKS L+ +F++ +F + TIG F S+ + V TVK +IWDTAGQER+ S+ YYRGAA A++VYDIT++ ++ W+ + + +PN+V+ L GNK DL R+VT EA +AQEN L F+ETSA T NV + F + A+ + Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 169
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2) HSP 1 Score: 143.28 bits (360), Expect = 1.181e-33 Identity = 69/169 (40.83%), Postives = 106/169 (62.72%), Query Frame = 2 Query: 101 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607 T + N K+VL+G+ G GK++L+ RF + +F +TIG F ++T+ + A VK +IWDTAG ERY ++ YYRGA A++V+D+T ++ ++W++EL +V+ L GNK+DL AR+V EEA +A+ NGL F+ETSA +TNV F + K + Sbjct: 5 TDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEI 173 The following BLAST results are available for this feature:
BLAST of CX290841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290841 ID=CX290841; Name=CX290841; organism=Citrus clementina; type=EST; length=693bpback to top |