CX290841

Overview
NameCX290841
Unique NameCX290841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.881e-39
Identity = 77/163 (47.24%), Postives = 112/163 (68.71%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 616
            K VL+GD G GKS+L++RF + +F    +STIG  F ++ + +++  +K +IWDTAGQERY ++   YYRGA  A+IVYDIT Q+SF+   +W++EL+   + N+V+ L GNK DLL  R V+ EEAQA+A EN L F+ETSA  A+NV + F  +   + R+
Sbjct:   12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRI 174          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.881e-39
Identity = 78/163 (47.85%), Postives = 112/163 (68.71%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 616
            K+VL+GD G GKS+L+ RF K +F    +STIG  F ++TL V+   VK +IWDTAGQERY ++   YYRGA  A++VYD+T +A+FE   +W++EL+   +PN+V+ L GNK+DL     V  E+ ++YA++  L FMETSA  ATNV D F E+  ++ R+
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRI 177          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.881e-39
Identity = 78/163 (47.85%), Postives = 110/163 (67.48%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 616
            KLVL+GD G GKS+L+ RF K +F    +STIG  F ++T  V    VK +IWDTAGQERY ++   YYRGA  A+++YD+T  A+FE A +W++EL+   +PN+V+ L GNK DL     V  EEA+A+A+   L+FMETSA  ATNV + F E+  ++ ++
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKI 177          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 82/199 (41.21%), Postives = 122/199 (61.31%), Query Frame = 2
Query:  107 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS--GM--VLMDRPGERTASASCC 691
            GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R++T EE +  A+E  + F+ETSAKT  NV  +F  +A  LP ++     S  GM  + +D+P E  AS   C
Sbjct:    8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGC 206          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 82/199 (41.21%), Postives = 122/199 (61.31%), Query Frame = 2
Query:  107 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS--GM--VLMDRPGERTASASCC 691
            GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R++T EE +  A+E  + F+ETSAKT  NV  +F  +A  LP ++     S  GM  + +D+P E  AS   C
Sbjct:    8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGC 206          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 82/199 (41.21%), Postives = 122/199 (61.31%), Query Frame = 2
Query:  107 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS--GM--VLMDRPGERTASASCC 691
            GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R++T EE +  A+E  + F+ETSAKT  NV  +F  +A  LP ++     S  GM  + +D+P E  AS   C
Sbjct:    8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGC 206          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 78/163 (47.85%), Postives = 113/163 (69.33%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 616
            KLVL+GD G GKS+L+ RF K +F    +STIG  F ++TL V+   VK +IWDTAGQERY ++   YYRGA  A++VYD+T +A+FE A +W++EL+   +PN+V+ L GNK+DL     V  E+ +++A+   L+FMETSA  ATNV + F E+  ++ R+
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRI 177          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.148e-39
Identity = 81/189 (42.86%), Postives = 121/189 (64.02%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVL--MDRPGERTASASC 688
            KLV LG+   GK+SL+ RF+  QF    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R ++ AIIVYDITN  SF   +KW+++++A+   ++++ L GNK DL D R+VT EE +  A+E  +  METSAK   NV  +F +IA+ LP ++     S  ++    +P E  +S +C
Sbjct:   13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVETQSTQMIDVSIQPNENESSCNC 201          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 74/163 (45.40%), Postives = 113/163 (69.33%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 616
            K+VL+GD G GKS+L+ RF K +F    +STIG  F +++L V+D  +K +IWDTAGQERY ++   YYRGA  A++VYD+T  ++FE  + W++EL+   +PN+V+ L GNK+DL     V  E+A+++A++  L+FMETSA  ATNV + F E+  ++  +
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHI 177          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.716e-38
Identity = 81/203 (39.90%), Postives = 122/203 (60.10%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV-----------QPAPNPSGM----VLMDRPGERTASASCC 691
            K+VL+GD   GKS ++ RF + +F    ++TIG  F ++TLA+   +VK +IWDTAGQERY ++   YYRGA  A++VYDIT + +F+   +W++EL+A  + N+V+ L GNK DL D R V  E+A+ +AQ+ GLFF+ETSA  ATN+ D F  +   +  +           Q   NP+ +    +L+  PG+       C
Sbjct:   17 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLTGKKILVPGPGQVIPEKKAC 219          
The following BLAST results are available for this feature:
BLAST of CX290841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT3_SCHPO1.881e-3947.24GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAA1B_ARATH1.881e-3947.85Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAA1A_ARATH1.881e-3947.85Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RAB6B_MOUSE2.457e-3941.21Ras-related protein Rab-6B OS=Mus musculus GN=Rab6... [more]
RAB6B_HUMAN2.457e-3941.21Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6... [more]
RAB6B_BOVIN2.457e-3941.21Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ... [more]
RB11D_LOTJA4.190e-3947.85Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RYH1_SCHPO7.148e-3942.86GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RAA1C_ARATH2.080e-3845.40Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11D_TOBAC2.716e-3839.90Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionC02027G05SK IF1 Citrus clementina cDNA clone C02027G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290841 ID=CX290841; Name=CX290841; organism=Citrus clementina; type=EST; length=693bp
GAGGCTCTTCGTCACCCTTCCATTTTTTTTTTTCCTTAATTTCGTCTCTA
ACCCTGCGATCCAATTTTGATCCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGTCA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTATGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTC
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