CX290841

Overview
NameCX290841
Unique NameCX290841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASH_MSVNS (GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RAS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 59/177 (33.33%), Postives = 101/177 (57.06%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK-----RLPRVQPAPNPSG 640
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE   ++ +++ + + + ++ M L GNK DL  AR V + +AQ  A+  G+ ++ETSAKT   V D FY + +     +L ++ P P+ SG
Sbjct:    5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNP-PDESG 178          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASH_HUMAN (GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 59/177 (33.33%), Postives = 101/177 (57.06%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK-----RLPRVQPAPNPSG 640
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE   ++ +++ + + + ++ M L GNK DL  AR V + +AQ  A+  G+ ++ETSAKT   V D FY + +     +L ++ P P+ SG
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNP-PDESG 178          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB36_HUMAN (Ras-related protein Rab-36 OS=Homo sapiens GN=RAB36 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 55/161 (34.16%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  125 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQA--YAQENGLFFMETSAKTATNVNDIFYEIA 598
            +K+V++GD+  GK+SL+ RF K  F    ++TIG  F  +   +       +IWDTAGQE++  +A  YYRGA   I  +D+T+  + E  ++W+++ L+     +  + L G K DLL        EA A   A+E    +   SAKT  NV   F  +A
Sbjct:  124 SKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKTGENVKAFFSRVA 284          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RB40L_HUMAN (Ras-related protein Rab-40A-like OS=Homo sapiens GN=RAB40AL PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 53/158 (33.54%), Postives = 86/158 (54.43%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 601
            K +L+GD   GKS ++     G          G  + + T+ ++   VK ++WDT+GQ R+ ++   Y RGA   I+VYDI N+ SFE   +W+++++    P +   L GN+  L   R+V  E+AQAYA+  G+ F E S     N+ + F E+A+
Sbjct:   16 KFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELAR 172          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RB40C_MOUSE (Ras-related protein Rab-40C OS=Mus musculus GN=Rab40c PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 52/158 (32.91%), Postives = 87/158 (55.06%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 601
            K +L+GD   GK  ++     G        + G  + + T+ ++   VK E+WDT+GQ R+ ++   Y RGA   ++VYDITN+ SF+   +W++E+     P +   L GN+  L   R+V  E+A+AYA++N + F E S     NV + F E+++
Sbjct:   16 KFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSR 172          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RB40C_HUMAN (Ras-related protein Rab-40C OS=Homo sapiens GN=RAB40C PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 52/158 (32.91%), Postives = 87/158 (55.06%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 601
            K +L+GD   GK  ++     G        + G  + + T+ ++   VK E+WDT+GQ R+ ++   Y RGA   ++VYDITN+ SF+   +W++E+     P +   L GN+  L   R+V  E+A+AYA++N + F E S     NV + F E+++
Sbjct:   16 KFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSR 172          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RB40B_MOUSE (Ras-related protein Rab-40B OS=Mus musculus GN=Rab40b PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 51/158 (32.28%), Postives = 83/158 (52.53%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 601
            K +L+GD   GK  ++     G          G    + T+ ++   VK ++WDT+GQ R+ ++   Y RGA   ++VYDI N+ SF+   +W++E+     P +   L GN+  L   R+V  E+AQAYA+  G+ F E S     N+ + F E+A+
Sbjct:   16 KFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDHKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVVLVYDIANRWSFDGINRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELAR 172          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RB40A_HUMAN (Ras-related protein Rab-40A OS=Homo sapiens GN=RAB40A PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 53/158 (33.54%), Postives = 86/158 (54.43%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 601
            K +L+GD   GKS ++     G          G  + + T+ ++   VK ++WDT+GQ R+ ++   Y RGA   I+VYDI N+ SFE   +W+++++    P +   L GN+  L   R+V  E+AQAYA+  G+ F E S     N+ + F E+A+
Sbjct:   16 KFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELAR 172          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASK_CYPCA (GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 54/161 (33.54%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + ++++  + + ++ M L GNK DL  +R V  ++AQ  A+  G+ F+ETSAKT   V+D FY + + +
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRSVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 163          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASH_CHICK (GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 59/177 (33.33%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK-----RLPRVQPAPNPSG 640
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE   ++ +++ + + + ++ M L GNK D L AR V   +AQ  A+  G+ ++ETSAKT   V D FY + +     +L ++ P P+ SG
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LPARTVETRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNP-PDESG 178          
The following BLAST results are available for this feature:
BLAST of CX290841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASH_MSVNS2.162e-1933.33GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RA... [more]
RASH_HUMAN2.162e-1933.33GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1[more]
RAB36_HUMAN2.162e-1934.16Ras-related protein Rab-36 OS=Homo sapiens GN=RAB3... [more]
RB40L_HUMAN2.824e-1933.54Ras-related protein Rab-40A-like OS=Homo sapiens G... [more]
RB40C_MOUSE2.824e-1932.91Ras-related protein Rab-40C OS=Mus musculus GN=Rab... [more]
RB40C_HUMAN2.824e-1932.91Ras-related protein Rab-40C OS=Homo sapiens GN=RAB... [more]
RB40B_MOUSE2.824e-1932.28Ras-related protein Rab-40B OS=Mus musculus GN=Rab... [more]
RB40A_HUMAN2.824e-1933.54Ras-related protein Rab-40A OS=Homo sapiens GN=RAB... [more]
RASK_CYPCA2.824e-1933.54GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1[more]
RASH_CHICK2.824e-1933.33GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02027G05SK IF1 Citrus clementina cDNA clone C02027G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290841 ID=CX290841; Name=CX290841; organism=Citrus clementina; type=EST; length=693bp
GAGGCTCTTCGTCACCCTTCCATTTTTTTTTTTCCTTAATTTCGTCTCTA
ACCCTGCGATCCAATTTTGATCCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGTCA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTATGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTC
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