CX290841

Overview
NameCX290841
Unique NameCX290841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 55/160 (34.38%), Postives = 92/160 (57.50%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            KLVL+GD G GK++ V R + G+F +   +TIG          N   +KF++WDTAGQE++  L   YY  A   II++D+T++ +++    W ++L  +   N+ + L GNK D+ + RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct:    9 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-RKVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 165          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASK_MSVKI (GTPase KRas OS=Kirsten murine sarcoma virus GN=K-RAS PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 54/161 (33.54%), Postives = 91/161 (56.52%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DT GQE Y ++   Y R     + V+ I N  SFE    + ++L+  + + ++ M L GNK DL  +R V  ++AQ  A+  G+ F+ETSAKT   V D FY + + +
Sbjct:    5 KLVVVGASGVGKSALTIQLIQNHFVDEYDPTIQDSYRKQVV-IDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQLKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASK_HUMAN (GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 54/161 (33.54%), Postives = 92/161 (57.14%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + ++++  + + ++ M L GNK DL  +R V  ++AQ  A+  G+ F+ETSAKT   V D FY + + +
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASH_MSVMO (GTPase HRas OS=Moloney murine sarcoma virus GN=H-RAS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 58/177 (32.77%), Postives = 101/177 (57.06%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK-----RLPRVQPAPNPSG 640
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE   ++ +++ + + + ++ M L GNK DL  AR V + +AQ  A+  G+ +++TSAKT   V D FY + +     +L ++ P P+ SG
Sbjct:    5 KLVVVGAKGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIKTSAKTRQGVEDAFYTLVREIRQHKLRKLNP-PDESG 178          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 55/160 (34.38%), Postives = 91/160 (56.88%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            KLVL+GD G GK++ V R + G+F +   +T+G          N   ++F +WDTAGQE++  L   YY     AII++D+T + +++    W ++L A+   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct:   11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-ARVCENIPIVLCGNKVDVKD-RKVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 167          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB38_MOUSE (Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 56/166 (33.73%), Postives = 90/166 (54.22%), Query Frame = 2
Query:  104 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV-KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVND 580
            T +K    KL+++GD+G GK+S++ R+V   F     +TIG  F  + L  +  TV + ++WD AGQER+ ++  +YYR A  A IV+D+T  A+FE   KW  +L ++     G P  V+ LA       D       +   + +E+G   + ETSAK   N+++
Sbjct:    3 TPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDE 168          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RIT2_RAT (GTP-binding protein Rit2 OS=Rattus norvegicus GN=Rit2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 52/163 (31.90%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 613
            K+V+LG  G GKS++ ++F+  QF ++ + TI  A+ +Q + +++     +I DTAGQ  + ++   Y RG    II Y +T++ SF+ A K+ + + Q +    + + L GNK DL   R+V+ EE    A++    F ETSA     ++D F  + + + R
Sbjct:   22 KVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGMTLARDYNCAFFETSAALRFGIDDAFQGLVREIRR 183          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: REBL1_RAT (GTPase RhebL1 OS=Rattus norvegicus GN=Rhebl1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 55/165 (33.33%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 619
            K+ +LG    GK+SL  +FV+G+F++  + T+   + S+T+ +        + DTAGQ++Y  L   +  G    ++VY++T+  SF+  K   Q+LQ   G   + + L GNKADL   R+V A E +  A+  G  FME+SA+    + DIF  + + + RV+
Sbjct:    8 KVAILGYRSVGKTSLAHQFVEGEFLKGYDPTVENTY-SKTVTLGKDEFHLHLVDTAGQDKYSILPYSFIIGVHGYVLVYNVTSLRSFQIVKNLYQKLQEGHGKTRLPVLLVGNKADLSADREVQAVEGKKLAESWGATFMESSARDNQLIQDIFIRVIQEIARVE 171          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 52/175 (29.71%), Postives = 94/175 (53.71%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVL 649
            KLV++G  G GKS+L ++F++  F++  + TI  ++  Q + ++D     ++ DTAGQE Y ++   Y R     ++VY IT++ SFE    + Q+ L+ +      + +  NK DL   R+V   E +  A+  G  F+ETSAK   NV+  F ++ + + +       +G ++
Sbjct:   12 KLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSAKVRINVDQAFQDLVREIRKYNKEQQTTGRMM 185          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 54/161 (33.54%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            KLV++G VG GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + +++ + + + ++ M L GNK   L +R V  ++AQ  A+  G+ F+ETSAKT   V+D FY + + +
Sbjct:    5 KLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC-ALPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 163          
The following BLAST results are available for this feature:
BLAST of CX290841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSP1_ASHGO3.688e-1934.38GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]
RASK_MSVKI4.817e-1933.54GTPase KRas OS=Kirsten murine sarcoma virus GN=K-R... [more]
RASK_HUMAN4.817e-1933.54GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1[more]
RASH_MSVMO4.817e-1932.77GTPase HRas OS=Moloney murine sarcoma virus GN=H-R... [more]
RAN_CAEEL4.817e-1934.38GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RAB38_MOUSE4.817e-1933.73Ras-related protein Rab-38 OS=Mus musculus GN=Rab3... [more]
RIT2_RAT6.291e-1931.90GTP-binding protein Rit2 OS=Rattus norvegicus GN=R... [more]
REBL1_RAT6.291e-1933.33GTPase RhebL1 OS=Rattus norvegicus GN=Rhebl1 PE=2 ... [more]
RAS_LENED6.291e-1929.71Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RASK_XENLA6.291e-1933.54GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02027G05SK IF1 Citrus clementina cDNA clone C02027G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290841 ID=CX290841; Name=CX290841; organism=Citrus clementina; type=EST; length=693bp
GAGGCTCTTCGTCACCCTTCCATTTTTTTTTTTCCTTAATTTCGTCTCTA
ACCCTGCGATCCAATTTTGATCCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGTCA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTATGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTC
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