CX290841

Overview
NameCX290841
Unique NameCX290841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 54/161 (33.54%), Postives = 92/161 (57.14%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + ++++  + + ++ M L GNK DL   R V  ++AQ  A+  G+ F+ETSAKT   V+D FY + + +
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PTRTVDTKQAQDLARSFGIPFIETSAKTRQGVDDAFYTLVREI 163          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAS2_HYDMA (Ras-like protein RAS2 OS=Hydra magnipapillata GN=RAS2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 51/175 (29.14%), Postives = 100/175 (57.14%), Query Frame = 2
Query:  104 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPA 625
            +G+ +   KLV++G  G GKS+L ++F++  F++  + TI  ++  Q + ++D     +I DTAGQE + ++   Y R     ++V+ +T+++SF+   ++  Q L+ +      M L GNK+DL + R V+  EAQ   ++  + ++E+SAK   NV+  F+++ + +     A
Sbjct:    2 SGDLDRQYKLVVVGGGGVGKSALTIQFIQSHFVQDYDPTIEDSYRKQCV-IDDKVAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQILRVKDIEEFPMILVGNKSDLENERTVSTAEAQELGRKLKVSYLESSAKQRINVDAAFHDLVRAIRNANKA 175          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB38_HUMAN (Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 54/158 (34.18%), Postives = 87/158 (55.06%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV-KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVND 580
            KL+++GD+G GK+S++ R+V   F     +TIG  F  + L  +  TV + ++WD AGQER+ ++  +YYR A  A IV+D+T  A+FE   KW  +L ++     G P  V+ LA       D       +   + +E+G   + ETSAK   N+++
Sbjct:   11 KLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDE 168          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAB36_MOUSE (Ras-related protein Rab-36 OS=Mus musculus GN=Rab36 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  125 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQA--YAQENGLFFMETSAKTATNVNDIFYEIA 598
            +K+V++GD+  GK+SL+ R  K  F    ++TIG  F  +   +       +IWDTAGQE++  +A  YYRGA   I  +D+T+  + E  ++W++++  +    +  + L G K DLL        EA+A   A E    +   SAKT  NV   F  +A
Sbjct:   58 SKVVVVGDLYVGKTSLIHRLCKNVFDHDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDVLRENEAGSCFIFLVGTKKDLLSGAACEQAEAEAVHLANEMQAEYWSVSAKTGENVKAFFSRVA 218          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: DJC27_CHICK (DnaJ homolog subfamily C member 27 OS=Gallus gallus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 49/175 (28.00%), Postives = 88/175 (50.29%), Query Frame = 2
Query:   77 LRSEHPMATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV----QELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 586
            + +  P      K++  K++ +G+   GKS ++ R+ + +F+    +TIG  +    + V D  +K  I+D AG   ++ +   +Y+     I+VYD+  + SF+    W+    QEL   GN  N+V  +  NK D    R V   E + +A+  G  + ETSA+T   +N++F
Sbjct:    1 MEANAPKRKEARKSLRIKVISMGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFDALDAWLAEMKQELGPHGNMDNIVFVVCANKIDCTKHRSVDESEGRLWAESRGFLYFETSAQTGEGINEMF 175          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 54/163 (33.13%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 613
            KLV+LG  G GKS++ ++F+  +F E  + TI  A+  + + ++D     +I DTAGQ  + ++   Y R     II Y IT++ SF   +++ Q + + +   +  + L GNK+DL   R+VT EE  A A+E    F ETSA     ++D+F+ + + + R
Sbjct:   23 KLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREIRR 184          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASK_RIVMA (GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 54/161 (33.54%), Postives = 92/161 (57.14%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 607
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + ++++  + + ++ M L GNK DL   R V  ++AQ  A+  G+ F+ETSAKT   V+D FY + + +
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKYDL-PTRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 163          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASH_RRASV (Transforming protein p29 OS=Rasheed rat sarcoma virus GN=RAS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 58/177 (32.77%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK-----RLPRVQPAPNPSG 640
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE   ++ +++ + + + ++ M L GNK DL  A  V + +AQ  A+  G+ ++ETSAKT   V D FY + +     +L ++ P P+ SG
Sbjct:   64 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-AHTVESRQAQDLARSYGIPYIETSAKTRPGVEDAFYTLVREIRQHKLRKLNP-PDESG 237          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 58/177 (32.77%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK-----RLPRVQPAPNPSG 640
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +  DTAGQE Y ++   Y R     + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  A+  G+ ++ETSAKT   V D FY + +     +L ++ P P+ SG
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDYLDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNP-PDESG 178          
BLAST of CX290841 vs. ExPASy Swiss-Prot
Match: RAS2_YEAST (Ras-like protein 2 OS=Saccharomyces cerevisiae GN=RAS2 PE=1 SV=4)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 50/159 (31.45%), Postives = 93/159 (58.49%), Query Frame = 2
Query:  128 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 601
            KLV++G  G GKS+L ++  +  F++  + TI  ++  Q + ++D     +I DTAGQE Y ++   Y R     ++VY IT+++S +    + Q+ L+ +    + + + GNK+DL + ++V+ ++    A++    F+ETSAK A NV + FY +A+
Sbjct:   12 KLVVVGGGGVGKSALTIQLTQSHFVDEYDPTIEDSYRKQVV-IDDEVSILDILDTAGQEEYSAMREQYMRNGEGFLLVYSITSKSSLDELMTYYQQILRVKDTDYVPIVVVGNKSDLENEKQVSYQDGLNMAKQMNAPFLETSAKQAINVEEAFYTLAR 169          
The following BLAST results are available for this feature:
BLAST of CX290841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASK_ORYLA6.291e-1933.54GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]
RAS2_HYDMA6.291e-1929.14Ras-like protein RAS2 OS=Hydra magnipapillata GN=R... [more]
RAB38_HUMAN6.291e-1934.18Ras-related protein Rab-38 OS=Homo sapiens GN=RAB3... [more]
RAB36_MOUSE6.291e-1932.92Ras-related protein Rab-36 OS=Mus musculus GN=Rab3... [more]
DJC27_CHICK6.291e-1928.00DnaJ homolog subfamily C member 27 OS=Gallus gallu... [more]
RIT1_HUMAN8.216e-1933.13GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]
RASK_RIVMA8.216e-1933.54GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=... [more]
RASH_RRASV8.216e-1932.77Transforming protein p29 OS=Rasheed rat sarcoma vi... [more]
RASH_MOUSE8.216e-1932.77GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]
RAS2_YEAST8.216e-1931.45Ras-like protein 2 OS=Saccharomyces cerevisiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02027G05SK IF1 Citrus clementina cDNA clone C02027G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290841 ID=CX290841; Name=CX290841; organism=Citrus clementina; type=EST; length=693bp
GAGGCTCTTCGTCACCCTTCCATTTTTTTTTTTCCTTAATTTCGTCTCTA
ACCCTGCGATCCAATTTTGATCCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGTCA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTATGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTC
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