CX290843

Overview
NameCX290843
Unique NameCX290843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig148 contig Ccv1_Contig148:6..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PWP2_YEAST (Periodic tryptophan protein 2 OS=Saccharomyces cerevisiae GN=PWP2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 50/173 (28.90%), Postives = 87/173 (50.29%), Query Frame = 3
Query:   24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPSE 536
            G  +   S A+ PDG  + T + +  +K+WD+ S   +A F+ H  +VTA+ F++ G  + +++ DG V+ WDL + +NFR+F  ++     N +  D SG  +   S D     V SV+      +    LSG  G  +C+ F  +   +A  S D+ +R++ + G     E
Sbjct:  343 GHFDSTNSLAYSPDGSRVVTASEDGKIKVWDITSGFCLATFEEHTSSVTAVQFAKRGQVMFSSSLDGTVRAWDLIRYRNFRTFTGTE-RIQFNCLAVDPSGEVVCAGSLDNFDIHVWSVQTG----QLLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIWSIFGRSQQVE 510          
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: Y2800_ANASP (Uncharacterized WD repeat-containing protein alr2800 OS=Anabaena sp. (strain PCC 7120) GN=alr2800 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 3
Query:   45 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN-----CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 506
            S AFHPDG  L + + +  +K+WD++    +    GH   V  ++FS +G  LA++A D  +KLWD+ + K  R+ +S        SV F   G  LA  S D R  ++      WN     C+KT+  +  T     + + PD+K +  GS DR ++++
Sbjct:  731 SVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGW--VRSVAFSADGQTLASGSGD-RTIKI------WNYHTGECLKTY--IGHTNSVYSIAYSPDSKILVSGSGDRTIKLW 879          

HSP 2 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 51/158 (32.28%), Postives = 80/158 (50.63%), Query Frame = 3
Query:   45 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT-AAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVF 506
            SAAF P+G +L T  ++  V++W+VKS   +    GH   V  + FS +G  LA+  A + VKLW +R     ++    + E    SV F   G  LA AS D  I+++ +     D  C++T   L+G T    CV F PD   +A  + D  ++++
Sbjct:  647 SAAFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHE--VFSVAFHPDGETLASASGDKTIKLWDI----QDGTCLQT---LTGHTDWVRCVAFSPDGNTLASSAADHTIKLW 795          
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 55/163 (33.74%), Postives = 83/163 (50.92%), Query Frame = 3
Query:   24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 509
            G     +S  FHP G  L +G+ ++ +K+WDV+ +  V ++ GH  AV  ++FS +G +LA+A+ D  VKLWDL   K    F S  S    N V F H   YL  + +  R  ++  ++  +N I +      TG    V F PD   +  GS +  LRV+G
Sbjct:  103 GHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTS--AVNVVQF-HPNEYLLASGSADRTVKLWDLE-KFNMIGS--SEGETGVVRSVLFNPDGSCLYSGS-ENTLRVYG 258          
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 3
Query:   24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 506
            G     TS    P+G  L T + +  + +W+ K  A   ++ GH   VT++ FS +G  LA+A+ D  V+LW   K   F  F++  +  P  SVDF   G +LA AS D  I+V+ +   +  ++  +       T    C KF PD + I   S D+ ++++
Sbjct:   16 GHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTA--PVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYR------HTHWVRCAKFSPDGRLIVSCSEDKTIKIW 171          
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 3
Query:   24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 506
            G     TS    P+G  L T + +  + +W+ K  A   ++ GH   VT++ FS +G  LA+A+ D  V+LW   K   F  F++  +  P  SVDF   G +LA AS D  I+V+ +   +  ++  +       T    C KF PD + I   S D+ ++++
Sbjct:   16 GHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTA--PVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYR------HTHWVRCAKFSPDGRLIVSCSEDKTIKIW 171          
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PWP2_NEUCR (Periodic tryptophan protein 2 homolog OS=Neurospora crassa GN=B18D24.40 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 49/173 (28.32%), Postives = 81/173 (46.82%), Query Frame = 3
Query:   24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPSE 536
            G  +   S  + PDG  + T   +  +K+WD +S   +  F  H   +TA  FS+ G  L T++ DG ++ WDL + +NFR+F ++      + +  D SG  +A  S D     + SV+      +    LSG  G  + + F P+   +  GS DR  R++ +      SE
Sbjct:  337 GHFDSMNSLVYSPDGQRIVTVADDGKIKVWDTESGFCIVTFTEHTSGITACEFSKKGNVLFTSSLDGSIRAWDLIRYRNFRTF-TAPERLSFSCMAVDPSGEIVAAGSVDSFDIHIWSVQTG----QLLDRLSGHEGPVSSLAFAPNGGLLVSGSWDRTARIWSIFNRTQTSE 504          
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 55/165 (33.33%), Postives = 81/165 (49.09%), Query Frame = 3
Query:   24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 509
            G      S  FHP G  + +G+ +  +K+WD++ +  V ++ GH  AV  + FS +G +LA+AA D  VKLWDL   K    F       P N V+F  +   LA  S+D  IR + +   +   +CI+  P     G    V F PD   +  G  D +LRV+G
Sbjct:  103 GHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTG--PVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQV-VSCIEGEP-----GPVRSVLFNPDGCCLYSGCQD-SLRVYG 258          
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 55/165 (33.33%), Postives = 81/165 (49.09%), Query Frame = 3
Query:   24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 509
            G      S  FHP G  + +G+ +  +K+WD++ +  V ++ GH  AV  + FS +G +LA+AA D  VKLWDL   K    F       P N V+F  +   LA  S+D  IR + +   +   +CI+  P     G    V F PD   +  G  D +LRV+G
Sbjct:  103 GHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTG--PVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQV-VSCIEGEP-----GPVRSVLFNPDGCCLYSGCQD-SLRVYG 258          
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 55/165 (33.33%), Postives = 80/165 (48.48%), Query Frame = 3
Query:   24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 509
            G      S  FHP G  + +G+ +  +K+WDV+ +  + K+  H  AV  + FS +G +LA+AA D  VKLWDL   K    FE +    P N V+F  S   LA  S+D  IR + +       +CI+            C+ F PD   +  G  D +LRV+G
Sbjct:  103 GHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVM--FEFTGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHV-VSCIE-----EEATPVRCILFNPDGCCLYGGFQD-SLRVYG 258          
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   21 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT-AAHDGVKLWDLRKL 251
            +G  EG  S A  PDG ++ +G ++A+ +IWD++S  ++   D H+  + A+++S NGY LAT +A D VK+WDLRK+
Sbjct:  304 EGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKV 381          
The following BLAST results are available for this feature:
BLAST of CX290843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
PWP2_YEAST7.780e-1528.90Periodic tryptophan protein 2 OS=Saccharomyces cer... [more]
Y2800_ANASP5.043e-1431.25Uncharacterized WD repeat-containing protein alr28... [more]
KTNB1_DANRE1.916e-1333.74Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
WD51B_PONAB4.269e-1329.88WD repeat-containing protein 51B OS=Pongo abelii G... [more]
WD51B_HUMAN4.269e-1329.88WD repeat-containing protein 51B OS=Homo sapiens G... [more]
PWP2_NEUCR4.269e-1328.32Periodic tryptophan protein 2 homolog OS=Neurospor... [more]
KTNB1_MOUSE4.269e-1333.33Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN4.269e-1333.33Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
KTNB1_CHICK9.511e-1333.33Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
YIDC_SCHPO4.720e-1242.31Uncharacterized WD repeat-containing protein C227.... [more]

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Properties
Property NameValue
Genbank descriptionC02027G07SK IF1 Citrus clementina cDNA clone C02027G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290843 ID=CX290843; Name=CX290843; organism=Citrus clementina; type=EST; length=726bp
AGGTTTCAGATGCTGGAACCGACGGTAGACCTGAAGGTTATACATCTGCA
GCTTTTCATCCTGATGGTCTCATCCTTGGAACGGGCACCTCAGAAGCTCT
TGTTAAGATTTGGGATGTGAAAAGTCAGGCGAATGTGGCGAAATTTGATG
GACATGTTGGAGCAGTTACAGCCATATCCTTTTCAGAAAATGGTTACTAC
CTTGCGACGGCAGCCCATGATGGTGTGAAGCTGTGGGACCTGCGTAAATT
GAAGAACTTCCGGTCATTTGAATCTTCTGATTCTGAGACGCCTACCAACT
CAGTGGATTTCGACCATAGTGGATCTTACCTCGCAGTTGCAAGTGCAGAT
ATAAGAGTCTACCAAGTGGCCAGCGTTAAAGCTGATTGGAATTGTATCAA
AACTTTTCCTGATTTATCAGGCACAGGTAAGGCAACTTGTGTGAAATTTG
GTCCAGATGCGAAATACATTGCTGTGGGATCAATGGACCGCAATCTACGT
GTATTTGGTCTGCCTGGCAATGATGCTCCATCAGAATCATAGAGCATTCT
AAAACTTAACCAATTTGAGAGGTGGGCACTGCCATTTTTTGCAGCCTCCA
TTAGTGTTTTTGTTCCGTTGGAGATGACGTGATTGGTGGAGTGCTGCTAG
TTCTGGTTCCTTACATGTCTCTGTTCCTAATTGTGGCATAGTGTTGTAGA
CCGGGTCTGGGATCGAGGGCGAAAAA
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