CX290843

Overview
NameCX290843
Unique NameCX290843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig148 contig Ccv1_Contig148:6..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 3
Query:   24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 350
            G      S  FHP G  + +G+ +  +K+WDV+ +  V ++ GH  AV  + FS +G +LA+A+ D  VKLWDL   K     E S+ + P N ++F  +   LA  SAD
Sbjct:  103 GHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMA--ELSEHKGPVNIIEFHPNEYLLASGSAD 210          
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PRP4_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 48/167 (28.74%), Postives = 82/167 (49.10%), Query Frame = 3
Query:   21 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASADIRVYQVASV--KADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVF 506
            +G   G    AFH DG + GTG  +A  ++WD+++   +   +GH+  +  I+FS NGY++AT + D   K+WDLR+ +   +  +   +     V F+   G +L   + D      A +     W+ +KT   L+G  GK   +    D + IA  S DR  +++
Sbjct:  361 EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPA--HQNLVTGVKFEPIHGDFLLTGAYD----NTAKIWTHPGWSPLKT---LAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518          
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PWP2_SCHPO (Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe GN=SPBC713.04c PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 3
Query:   33 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGL 512
            +  ++  +  DG  + TG  +  +K+WD+ S   +  F  H  AV+ + FS+ G  L +++ DG V+ WDL + +NFR+F ++ S    + +  D SG  +   S D     + SV+      +    L+G  G  + + F      +A GS D+ +R++ +
Sbjct:  340 DALSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSKRGNVLFSSSLDGSVRAWDLIRYRNFRTF-TAPSRVQFSCIAVDPSGEIVCAGSQDSFEIFMWSVQTG----QLLETLAGHEGPVSSLSFNSSGSLLASGSWDKTVRIWDI 496          
The following BLAST results are available for this feature:
BLAST of CX290843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
KTNB1_XENTR3.059e-1136.36Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
PRP4_MOUSE3.996e-1128.74U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus ... [more]
PWP2_SCHPO6.816e-1126.54Periodic tryptophan protein 2 homolog OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionC02027G07SK IF1 Citrus clementina cDNA clone C02027G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290843 ID=CX290843; Name=CX290843; organism=Citrus clementina; type=EST; length=726bp
AGGTTTCAGATGCTGGAACCGACGGTAGACCTGAAGGTTATACATCTGCA
GCTTTTCATCCTGATGGTCTCATCCTTGGAACGGGCACCTCAGAAGCTCT
TGTTAAGATTTGGGATGTGAAAAGTCAGGCGAATGTGGCGAAATTTGATG
GACATGTTGGAGCAGTTACAGCCATATCCTTTTCAGAAAATGGTTACTAC
CTTGCGACGGCAGCCCATGATGGTGTGAAGCTGTGGGACCTGCGTAAATT
GAAGAACTTCCGGTCATTTGAATCTTCTGATTCTGAGACGCCTACCAACT
CAGTGGATTTCGACCATAGTGGATCTTACCTCGCAGTTGCAAGTGCAGAT
ATAAGAGTCTACCAAGTGGCCAGCGTTAAAGCTGATTGGAATTGTATCAA
AACTTTTCCTGATTTATCAGGCACAGGTAAGGCAACTTGTGTGAAATTTG
GTCCAGATGCGAAATACATTGCTGTGGGATCAATGGACCGCAATCTACGT
GTATTTGGTCTGCCTGGCAATGATGCTCCATCAGAATCATAGAGCATTCT
AAAACTTAACCAATTTGAGAGGTGGGCACTGCCATTTTTTGCAGCCTCCA
TTAGTGTTTTTGTTCCGTTGGAGATGACGTGATTGGTGGAGTGCTGCTAG
TTCTGGTTCCTTACATGTCTCTGTTCCTAATTGTGGCATAGTGTTGTAGA
CCGGGTCTGGGATCGAGGGCGAAAAA
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