CX290843
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11 Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 3 Query: 24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 350 G S FHP G + +G+ + +K+WDV+ + V ++ GH AV + FS +G +LA+A+ D VKLWDL K E S+ + P N ++F + LA SAD Sbjct: 103 GHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMA--ELSEHKGPVNIIEFHPNEYLLASGSAD 210
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PRP4_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11 Identity = 48/167 (28.74%), Postives = 82/167 (49.10%), Query Frame = 3 Query: 21 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASADIRVYQVASV--KADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVF 506 +G G AFH DG + GTG +A ++WD+++ + +GH+ + I+FS NGY++AT + D K+WDLR+ + + + + V F+ G +L + D A + W+ +KT L+G GK + D + IA S DR +++ Sbjct: 361 EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPA--HQNLVTGVKFEPIHGDFLLTGAYD----NTAKIWTHPGWSPLKT---LAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PWP2_SCHPO (Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe GN=SPBC713.04c PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11 Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 3 Query: 33 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGL 512 + ++ + DG + TG + +K+WD+ S + F H AV+ + FS+ G L +++ DG V+ WDL + +NFR+F ++ S + + D SG + S D + SV+ + L+G G + + F +A GS D+ +R++ + Sbjct: 340 DALSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSKRGNVLFSSSLDGSVRAWDLIRYRNFRTF-TAPSRVQFSCIAVDPSGEIVCAGSQDSFEIFMWSVQTG----QLLETLAGHEGPVSSLSFNSSGSLLASGSWDKTVRIWDI 496 The following BLAST results are available for this feature:
BLAST of CX290843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290843 ID=CX290843; Name=CX290843; organism=Citrus clementina; type=EST; length=726bpback to top |