CX290847

Overview
NameCX290847
Unique NameCX290847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290847_ssr45 microsatellite CX290847_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:29..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_BURMS (Adenylate kinase OS=Burkholderia mallei (strain SAVP1) GN=adk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 54/178 (30.34%), Postives = 85/178 (47.75%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPVVQYY 640
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R                                R+DD  ET++KR  V+   + P++ YY
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 182          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_BURMA (Adenylate kinase OS=Burkholderia mallei GN=adk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 54/178 (30.34%), Postives = 85/178 (47.75%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPVVQYY 640
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R                                R+DD  ET++KR  V+   + P++ YY
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 182          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_BURM9 (Adenylate kinase OS=Burkholderia mallei (strain NCTC 10229) GN=adk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 54/178 (30.34%), Postives = 85/178 (47.75%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPVVQYY 640
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R                                R+DD  ET++KR  V+   + P++ YY
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 182          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_BURM7 (Adenylate kinase OS=Burkholderia mallei (strain NCTC 10247) GN=adk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 54/178 (30.34%), Postives = 85/178 (47.75%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPVVQYY 640
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R                                R+DD  ET++KR  V+   + P++ YY
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 182          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_BAUCH (Adenylate kinase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=adk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYY 640
            LG PGSGKGTQ   I++ +G  H+S GD+LR  +   S  G  IQ +IK G +VP ++ I+L+++ + +    K FL+DGFPR      A E V  I  + VL     ++ +  RI+ R                   +G           R+DD  +T+R R   + +  +P++ YY
Sbjct:    6 LGAPGSGKGTQAQFIMKKYGIPHISTGDMLRTTVNKESVLGKNIQAIIKLGNLVPDQLVIELVKERIIQYDCSKGFLLDGFPRTLTQAYAME-VAGINVDIVLILRIPDKIIINRIVGRMVHEPSGRIYHVTFNPPKQKGKDDITGENLIIRQDDKEDTVRHRLIGYHQQMIPIITYY 182          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_SPHWW (Adenylate kinase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=adk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 53/192 (27.60%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEP---EFVLFFDCSEEEMERRILNR----NQG--------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKID 670
            LG PG+GKGTQ + +V   G   LS GD+LRA +K+G+  G   + +++ G++V  E+   L+ + ++  + ++  + DG+PR E    + + +        + V+  +  E+ +  RI  R    N G                          R DDN ET+R R   +   + P++  YEA+G VR++D
Sbjct:    6 LGPPGAGKGTQASKLVADRGMVQLSTGDMLRAAVKAGTPIGLKAKAVMEAGELVSDEIVSGLIGEKLDSMAASEGAIFDGYPRTEAQAHSLDEILASRGRVLDHVIELEVDEDALVERITGRYTCANCGEGYHDRFKQPKVAGVCDVCGSAEFKRRPDDNEETVRTRMAEYRAKTAPILPVYEARGLVRRVD 197          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_RHIME (Adenylate kinase OS=Rhizobium meliloti GN=adk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 46/170 (27.06%), Postives = 88/170 (51.76%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR--------NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKID 670
            LG PG+GKGTQ   + E +G   LS GD+LR  +   +E G   + ++  G++V  E+  +++   ++ +   + F++DG+PR      A + + +   ++ + V+     E  + RR+ NR           R DDN E  R+R + + E + P+ ++Y   G+++ +D
Sbjct:    6 LGPPGAGKGTQAKLLTERYGIPQLSTGDMLRTAVAQATEVGKRAKAVMDAGQLVSDEIVNEIVSDRIDSADCARGFILDGYPRTVPQAVALDRMLEEKGLKLDAVIELKVDEAALVRRMENRVTETVAAGGTVRSDDNPEAFRRRLQEYREKTAPLSEHYARTGRLKTVD 175          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_RALSO (Adenylate kinase OS=Ralstonia solanacearum GN=adk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRN-EENRAAFEAVTKIE--PEFVLFFDCSEEEMERRILN--------------RNQG-----------REDDNVETIRKRFKVFLESSLPVVQYY 640
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   + ++  G +V  ++ I L++  +++S   + +L DGFPR   +  A  +A   I+   E  + FD   E M  R ++              +N+G           R+DD  ET+RKR  V+   + P+V YY
Sbjct:    6 LGAPGAGKGTQAKFICERFGIPQISTGDMLRAAVKAGTPLGIEAKKVMDAGGLVSDDIIIGLVKDRLQQSDCKNGYLFDGFPRTIPQAEAMKDAGVPIDYVLEIDVPFDAIIERMSGRRVHVASGRTYHVKYNPPKNEGQDDETGDPLIQRDDDKEETVRKRLSVYENQTRPLVDYY 182          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_PSEPF (Adenylate kinase OS=Pseudomonas fluorescens (strain Pf0-1) GN=adk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 54/179 (30.17%), Postives = 86/179 (48.04%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYE 643
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+E G   ++++  G +V  ++ I L++  + ++   K FL DGFPR      A      +E + V+     +EE+ +RI  R                                R+DD  ET+R R  V+   + P+V++Y+
Sbjct:    6 LGAPGAGKGTQAKFITEKFGIPQISTGDMLRAAVKAGTELGIKAKSIMDAGGLVSDDLIIALVKDRIAQADCAKGFLFDGFPRTIPQAEAL-VTAGVELDAVVEIAVEDEEIVQRIAGRRVHEASGRVYHIVYNPPKIAGKDDITGEELVQRKDDTEETVRHRLSVYHSQTKPLVEFYQ 183          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_ALHEH (Adenylate kinase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=adk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 57/185 (30.81%), Postives = 91/185 (49.19%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYE---AKG 652
            LG PG+GKGTQ A I E F    +S GD+LRA +K+G+  G   + ++  G++V  ++ + L+++ + E    + FL DGFPR        +A   I  + V+     +E++ +R+  R                   +G           R+DD  ET+RKR  V+ E + P+V+YY    AKG
Sbjct:    6 LGPPGAGKGTQAAGICERFDIPQISTGDMLRAAVKAGTPLGQQAKKVMDAGELVSDDIIMGLVKERIAEPDCANGFLFDGFPRTIAQAEGLKA-EGINVDAVVEIQVPDEDIVQRMAGRRVHPGSGRVYHVEHNPPKEEGKDDVTGEPLVQRDDDQEETVRKRLGVYHEQTQPLVEYYSDWAAKG 189          
The following BLAST results are available for this feature:
BLAST of CX290847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_BURMS1.044e-1530.34Adenylate kinase OS=Burkholderia mallei (strain SA... [more]
KAD_BURMA1.044e-1530.34Adenylate kinase OS=Burkholderia mallei GN=adk PE=... [more]
KAD_BURM91.044e-1530.34Adenylate kinase OS=Burkholderia mallei (strain NC... [more]
KAD_BURM71.044e-1530.34Adenylate kinase OS=Burkholderia mallei (strain NC... [more]
KAD_BAUCH1.044e-1531.46Adenylate kinase OS=Baumannia cicadellinicola subs... [more]
KAD_SPHWW1.364e-1527.60Adenylate kinase OS=Sphingomonas wittichii (strain... [more]
KAD_RHIME1.364e-1527.06Adenylate kinase OS=Rhizobium meliloti GN=adk PE=3... [more]
KAD_RALSO1.364e-1532.20Adenylate kinase OS=Ralstonia solanacearum GN=adk ... [more]
KAD_PSEPF1.364e-1530.17Adenylate kinase OS=Pseudomonas fluorescens (strai... [more]
KAD_ALHEH1.364e-1530.81Adenylate kinase OS=Alkalilimnicola ehrlichei (str... [more]

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Properties
Property NameValue
Genbank descriptionC02027G11SK IF1 Citrus clementina cDNA clone C02027G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290847 ID=CX290847; Name=CX290847; organism=Citrus clementina; type=EST; length=672bp
GAGGATTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTC
TCTCTCCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGA
CTGAGTTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGA
AGCAGATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGG
GTGGACCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACAC
TTTGGATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAA
ATCTGGCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAA
AAATCGTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAG
GAAAGTGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGA
AAATCGTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTC
TGTTTTTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGG
AATCAGGGAAGAGAAGATGATAACGTTGAGACAATTAGGAAGCGGTTTAA
GGTTTTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGG
GTAAAGTTCGGAAGATTGATGC
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