CX290847

Overview
NameCX290847
Unique NameCX290847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290847_ssr45 microsatellite CX290847_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:29..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_CORGL (Adenylate kinase OS=Corynebacterium glutamicum GN=adk PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 64/169 (37.87%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENR---AAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY-------EAKGKVRKID 670
            LG PG+GKGTQ A + E  G  H+S GDL RA I  G+  G   +  I  GK+VP++VT +++   + ES   + FL+DGFPR  E     A   +      + V+ +  SE+ +  R+L+R  GR DDN ETIR R  V+ + + P++ +Y       EA+G+V +I+
Sbjct:    6 LGPPGAGKGTQAAILSEKLGIPHISTGDLFRANIGEGTPLGIEAKQYIDAGKLVPTDVTARMVASRLAESDAAEGFLLDGFPRTVEQADILANLLSEAGQTLDGVVNYQVSEDVVVERMLSR--GRADDNEETIRTRLGVYRDETAPLIDHYGDKIINIEAEGEVEEIN 172          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_CORGB (Adenylate kinase OS=Corynebacterium glutamicum (strain R) GN=adk PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 64/169 (37.87%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENR---AAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY-------EAKGKVRKID 670
            LG PG+GKGTQ A + E  G  H+S GDL RA I  G+  G   +  I  GK+VP++VT +++   + ES   + FL+DGFPR  E     A   +      + V+ +  SE+ +  R+L+R  GR DDN ETIR R  V+ + + P++ +Y       EA+G+V +I+
Sbjct:    6 LGPPGAGKGTQAAILSEKLGIPHISTGDLFRANIGEGTPLGIEAKQYIDAGKLVPTDVTARMVASRLAESDAAEGFLLDGFPRTVEQADILANLLSEAGQTLDGVVNYQVSEDVVVERMLSR--GRADDNEETIRTRLGVYRDETAPLIDHYGDKIINIEAEGEVEEIN 172          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_COREF (Adenylate kinase OS=Corynebacterium efficiens GN=adk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21
Identity = 64/169 (37.87%), Postives = 97/169 (57.40%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLIDGFPRN-EENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY-------EAKGKVRKID 670
            LG PG+GKGTQ A + E  G  H+S GDL RA I  G+  G   +  I  GK+VP++VT +++Q  + E+   + FL+DGFPR  E+     + + K     + V+ +  SE+ +  R+L+R  GR DDN ETIR R  V+ + + P++ +Y       EA+G V  I+
Sbjct:    6 LGPPGAGKGTQAAILSEKLGIPHISTGDLFRANIGEGTPLGIEAKQYIDAGKLVPTDVTARMVQSRLAEADAAEGFLLDGFPRTVEQADILADLLDKAGNPLDGVINYQVSEDVVVERMLSR--GRADDNEETIRTRLGVYRDETAPLISHYGDKIINIEAEGSVEDIN 172          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_CAMLR (Adenylate kinase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=adk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21
Identity = 63/162 (38.89%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKI 667
            +G PGSGK T  + I  ++   TH S GDLLRAE+ SGSE G  I + I +G +VP EV +  +  A++ +  +  LIDG+PR+ E    F+ V K + E     V+    SEE    R+L R +G  DDN E    R KV+LE    +  +Y AK  +  I
Sbjct:    8 IGAPGSGKTTDASIIANDNANITHYSTGDLLRAEVASGSELGKTIDSFISKGNLVPLEVVVNTIITALKNAPTNTILIDGYPRSVEQMLEFDKVLKNQSEVNLKGVIEVKVSEEVARERVLGRARG-ADDNEEVFNNRMKVYLEPLNEITNFY-AKENIHHI 167          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_PROMA (Adenylate kinase OS=Prochlorococcus marinus GN=adk PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 55/161 (34.16%), Postives = 99/161 (61.49%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFE-AVTKIEP--EFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKID 670
            LG PG+GKGTQ + I +  G+ HLS GDLLR E+  G++ G   + ++ +G++V  E+ I +++K + +  ++ +L+DGFPRN    +  +  + +I    E VL  +  +E +  R+L R  GR+DDN   I+ R K++ + + P+V +Y+ +G ++ I+
Sbjct:    8 LGPPGAGKGTQASLICKDQGFLHLSTGDLLREEVSGGTDLGKKAELIMNKGELVSDEIVISIVEKRLIKY-SEGWLLDGFPRNLAQASLLQNLLGRISQPIEIVLLIEIDDEILTERMLGR--GRKDDNKAVIKNRLKIYKDQTSPLVDHYKKQGILKSIN 165          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_PETMO (Adenylate kinase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=adk PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 60/189 (31.75%), Postives = 97/189 (51.32%), Query Frame = 2
Query:  200 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR----NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKID 670
            G PG+GKGTQ   + + F   H+S GD+LR  +  G+E G M + ++  G++V  E+   L+++ +EE   D F++DG+PR  +     +  TK    E +  +  D SEEE+ +RI NR    N G                         R+DD  E +R+R+KV+ +++ PV++YY    K+  ID
Sbjct:    7 GPPGAGKGTQAKKVAQEFQIVHISTGDILRDAVSKGTELGKMAKAIMDRGELVSDEIMNSLVKERLEEL--DSFILDGYPRTLDQAKFLDQATKELQKEIDAAVLIDVSEEEIVKRISNRRVCPNCGKVYNLITLQPKEDEKCDVCGTKLIQRDDDKEEVVRERYKVYKKNTEPVIEYYRKNNKIITID 193          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_EXISA (Adenylate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=adk PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 62/191 (32.46%), Postives = 97/191 (50.79%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR-----------------------------NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKID 670
            +G PG+GKGTQ A IVE +   H+S GD+ RA IK G+  G   ++ + +G++VP EVTI ++++ + +   +K FL+DGFPR      A E++ K    + + V+  D   E +  R+  R                                REDD  ET+R+R  V +E S P++ +Y  KG +R +D
Sbjct:    6 MGLPGAGKGTQAAKIVEEYQIPHISTGDMFRAAIKGGTPLGKEAKSFMDKGELVPDEVTIGIVRERLSQDDTEKGFLLDGFPRTVAQAEALESLLKDLGKQIDHVVNIDVDAEILVPRLTGRWICPTCGATYHVIFNPPKVEGICDVDGSALMQREDDKEETVRRRLDVNIEQSKPLIDFYAEKGYLRTLD 196          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_CAMFF (Adenylate kinase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=adk PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 59/156 (37.82%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 649
            +G PGSGK T  + I  +   + H S GDLLRAE+ SGSE G +I + I +G +VP EV +  +  A+  S  +  LIDG+PR+EE     + V    ++++ + V+  D SEE    R+L R +G  DDN E    R KV+L+    +  +Y  K
Sbjct:    8 IGAPGSGKTTDASMIAANDDKFAHYSTGDLLRAEVASGSELGKLIDSFISKGNLVPLEVVVNTIISAIRSSDKNYILIDGYPRSEEQMRELDRVLASQSEVKLDGVIEVDVSEEVARNRVLGRARG-ADDNNEVFNNRMKVYLDPIKEIRAFYNDK 162          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_THEFY (Adenylate kinase OS=Thermobifida fusca (strain YX) GN=adk PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRN---EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKID 670
            +G PG+GKGTQ   +        +S GD+ RA +  G+E G   Q  +  G +VP E+T  +++ +  E+     FL+DGFPRN    E      A   ++ + VL     EEE+ RR+  R +   R DDN ETIR R  V+ E + P+V +YE +G + KID
Sbjct:    6 VGPPGAGKGTQAQILASKLSIPKVSTGDIFRANVSGGTELGKKAQAYMDRGDLVPDEITNAMVRDRLAEDDARAGFLLDGFPRNLAQAETLDEMLADLGVKLDVVLELVVDEEEVIRRLAERARIDNRSDDNEETIRHRLVVYREQTAPLVSFYEKRGLLEKID 169          
BLAST of CX290847 vs. ExPASy Swiss-Prot
Match: KAD_PROM5 (Adenylate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=adk PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 54/152 (35.53%), Postives = 96/152 (63.16%), Query Frame = 2
Query:  197 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRN-EENRAAFEAVTKIEP--EFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 643
            LG PG+GKGTQ A + E   Y HLS G+LLR EI   +  G  +++++ +G++V  ++ ++++ K + +  N  +++DG+PRN  +  +  E +  I    E V + D  +E + +R+L R  GR+DDN ETI+ R K++ E++ P+++YY+
Sbjct:    8 LGPPGAGKGTQAAYLSEANSYLHLSTGELLRKEIDLDTYLGKQVKDIMNKGELVSDQLVLEIVNKNLSKD-NKGWILDGYPRNLSQVNSLNEVLMNINQPLEIVFYLDVPDEVLIKRLLLR--GRKDDNEETIKTRLKIYKETTEPLIEYYK 156          
The following BLAST results are available for this feature:
BLAST of CX290847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_CORGL1.273e-2137.87Adenylate kinase OS=Corynebacterium glutamicum GN=... [more]
KAD_CORGB1.273e-2137.87Adenylate kinase OS=Corynebacterium glutamicum (st... [more]
KAD_COREF1.663e-2137.87Adenylate kinase OS=Corynebacterium efficiens GN=a... [more]
KAD_CAMLR1.663e-2138.89Adenylate kinase OS=Campylobacter lari (strain RM2... [more]
KAD_PROMA2.172e-2134.16Adenylate kinase OS=Prochlorococcus marinus GN=adk... [more]
KAD_PETMO2.172e-2131.75Adenylate kinase OS=Petrotoga mobilis (strain DSM ... [more]
KAD_EXISA2.172e-2132.46Adenylate kinase OS=Exiguobacterium sp. (strain AT... [more]
KAD_CAMFF2.172e-2137.82Adenylate kinase OS=Campylobacter fetus subsp. fet... [more]
KAD_THEFY2.837e-2136.59Adenylate kinase OS=Thermobifida fusca (strain YX)... [more]
KAD_PROM52.837e-2135.53Adenylate kinase OS=Prochlorococcus marinus (strai... [more]

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Properties
Property NameValue
Genbank descriptionC02027G11SK IF1 Citrus clementina cDNA clone C02027G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290847 ID=CX290847; Name=CX290847; organism=Citrus clementina; type=EST; length=672bp
GAGGATTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTC
TCTCTCCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGA
CTGAGTTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGA
AGCAGATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGG
GTGGACCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACAC
TTTGGATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAA
ATCTGGCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAA
AAATCGTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAG
GAAAGTGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGA
AAATCGTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTC
TGTTTTTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGG
AATCAGGGAAGAGAAGATGATAACGTTGAGACAATTAGGAAGCGGTTTAA
GGTTTTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGG
GTAAAGTTCGGAAGATTGATGC
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