CX290855

Overview
NameCX290855
Unique NameCX290855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.772e-63
Identity = 117/183 (63.93%), Postives = 147/183 (80.33%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 671
            D Y +KAPS F+ R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA + VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +A++C L  L  K I EVIGREIEK+T  IYPLQNV
Sbjct:   28 DEYSVKAPSTFQTRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREASTCTLSQLTHKLIPEVIGREIEKSTQGIYPLQNV 210          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_IXOSC (40S ribosomal protein S3a OS=Ixodes scapularis PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.772e-63
Identity = 119/183 (65.03%), Postives = 147/183 (80.33%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 671
            DWYD+KAP+ + VRN+GKT V RTQGTKIASEGLK RVFEVS  DL N E+ AYRK RL AE+VQG+NVLTNF GM+ TTDKLRS+V+KW TLIEA VDV+TTD + LR+FCIGFTK+  NQ+K+TCYAQ +Q+R IR+KM E+MV + +S +LK +V K I   IG++IEK+   IYPL +V
Sbjct:   29 DWYDVKAPTMYTVRNIGKTFVNRTQGTKIASEGLKGRVFEVSQADLTNGED-AYRKFRLIAEEVQGRNVLTNFHGMDLTTDKLRSMVKKWQTLIEATVDVRTTDGYLLRMFCIGFTKKCANQLKKTCYAQHNQVRLIRKKMTEMMVVEVSSSNLKDVVNKLIPGSIGKDIEKSCQHIYPLHDV 210          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_CHAGB (40S ribosomal protein S1 OS=Chaetomium globosum GN=RPS1 PE=3 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.772e-63
Identity = 121/183 (66.12%), Postives = 144/183 (78.69%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 671
            DWY IKAP+ F +R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+H++RKI+LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V V TTD++ LRLF I FTKR PNQ+K+T YA TSQIR IRRKM EI+  +A+SC L  L  K I EVIGREIEKAT  IYPLQNV
Sbjct:   28 DWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHSFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVMTTDHYLLRLFAIAFTKRRPNQIKKTTYAATSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNV 210          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_BOTFB (40S ribosomal protein S1 OS=Botryotinia fuckeliana (strain B05.10) GN=rps1 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.772e-63
Identity = 118/183 (64.48%), Postives = 146/183 (79.78%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 671
            DWY IKAPS F++R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA + VKTTD++ LRLF I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A++C L  L  K I EVIGREIEKAT  IYPLQNV
Sbjct:   28 DWYQIKAPSSFQIRDVGKTLVNRTTGLKNANDSLKGRIVEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNV 210          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.315e-63
Identity = 117/184 (63.59%), Postives = 147/184 (79.89%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVF 674
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V+
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVY 211          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.315e-63
Identity = 119/183 (65.03%), Postives = 146/183 (79.78%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 671
            DWY IKAP+ F +R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V V+TTD++ LRLF I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A+SC L+ L  K I EVIGREIEKAT  IYPLQNV
Sbjct:   28 DWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVQTTDHYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVIGREIEKATQGIYPLQNV 210          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 241.891 bits (616), Expect = 2.315e-63
Identity = 117/184 (63.59%), Postives = 147/184 (79.89%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVF 674
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG+++EKA  SIYPL +VF
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVF 211          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 3.023e-63
Identity = 117/184 (63.59%), Postives = 147/184 (79.89%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVF 674
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V+
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVY 211          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 3.948e-63
Identity = 117/184 (63.59%), Postives = 147/184 (79.89%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVF 674
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V+
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVY 211          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 3.948e-63
Identity = 117/184 (63.59%), Postives = 147/184 (79.89%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVF 674
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQV++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V+
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVY 211          
The following BLAST results are available for this feature:
BLAST of CX290855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RS3A_PENCW1.772e-6363.9340S ribosomal protein S1 OS=Penicillium chrysogenu... [more]
RS3A_IXOSC1.772e-6365.0340S ribosomal protein S3a OS=Ixodes scapularis PE=... [more]
RS3A_CHAGB1.772e-6366.1240S ribosomal protein S1 OS=Chaetomium globosum GN... [more]
RS3A_BOTFB1.772e-6364.4840S ribosomal protein S1 OS=Botryotinia fuckeliana... [more]
RS3A_TAEGU2.315e-6363.5940S ribosomal protein S3a OS=Taeniopygia guttata G... [more]
RS3A_PODAN2.315e-6365.0340S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_GECJA2.315e-6363.5940S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_EIMTE3.023e-6363.5940S ribosomal protein S3a OS=Eimeria tenella PE=2 ... [more]
RS3A_XENTR3.948e-6363.5940S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]
RS3A_ORYLA3.948e-6363.5940S ribosomal protein S3a OS=Oryzias latipes GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionC02027H07SK IF1 Citrus clementina cDNA clone C02027H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290855 ID=CX290855; Name=CX290855; organism=Citrus clementina; type=EST; length=675bp
CGAGGCAGCGGAGCCGTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTC
GGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGC
TGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCATCTT
GTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGT
ACCAAGATTGCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACT
AGGTGATCTTCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGA
GAGCTGAAGATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATG
AATTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTT
GATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGGT
TGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCAGGTTAAGAGGACT
TGCTACGCACAGACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGA
GATCATGGTTGCTCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAA
AGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGC
ATATACCCCTTACAAAATGTGTTCA
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