CX290855

Overview
NameCX290855
Unique NameCX290855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.006e-58
Identity = 113/183 (61.75%), Postives = 144/183 (78.69%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 671
            +WYD+KAPS F VR +GKTLVTR+QGTKIAS+ LK RVFEVSL DL N+E   +RK +L AE+VQG+NVLTNF GM+ T DKL S+V+KW TLIEA VDVKTTD + LR+F IGFTK+  NQVK+TCYAQ +Q++ IR+KM EI+  + +S D+K +V K I + IG++IEK+   IYPL +V
Sbjct:   29 EWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDNLKGRVFEVSLADLQNDEV-TFRKFKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYLLRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDV 210          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.716e-58
Identity = 114/184 (61.96%), Postives = 138/184 (75.00%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVF 674
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK RVFEVSLGDL N  E  +RK +L AEDVQGKNVLTNF  M+ T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+T Y +TS+IR+IR +M   +  +   CDLK +V K I + IG++IEK  S +YPLQ V+
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSANQVKKTSYTKTSKIRKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVY 209          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.242e-58
Identity = 109/183 (59.56%), Postives = 140/183 (76.50%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 671
            +WYDIKAP+ F  RNVGKTL+ ++ G K A +GLK RV EVSL DL   E+H+++KI+LR ++VQGKN+LTNF G +FT+DK+RSLVRKW +L+EA V VKT D++ LR+FCI FT+R  NQ+K+T YAQ+SQ+  IR+KM EIM  + ++  L  L  K I EVIGREIEKA   IYPLQNV
Sbjct:   28 EWYDIKAPTTFENRNVGKTLINKSTGLKNAVDGLKGRVVEVSLADLQGSEDHSFKKIKLRVDEVQGKNLLTNFHGFDFTSDKVRSLVRKWQSLVEANVTVKTADDYVLRIFCIAFTRRHQNQIKKTTYAQSSQLSAIRKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEKAAEGIYPLQNV 210          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.242e-58
Identity = 115/183 (62.84%), Postives = 140/183 (76.50%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 671
            +WYDIKAPS F V+++GKTLV RTQGTKIASEGLK RV+EVSLGDL N  E  +RK+RL  EDVQG+  LTNF GM  T DKL S+V+KWHTLIEA V VKT+D + LRLFCIGFTK+   Q+K+T YA++S+IRQIR KM E M  +    DLK +  K + + IG++IEKA S IYPLQ+V
Sbjct:   26 EWYDIKAPSMFNVQHIGKTLVNRTQGTKIASEGLKGRVYEVSLGDL-NNAESEFRKMRLICEDVQGRTCLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTSDGYLLRLFCIGFTKKNARQLKKTSYAKSSKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACSYIYPLQDV 207          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58
Identity = 109/184 (59.24%), Postives = 140/184 (76.09%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVF 674
            DWYDIKAP+ F  RNVGKT V R+QG K A + LK R+ E SL DL  ++E AYRK +L+ + +QG+  LTNF+GM+FT+DKLRSLVRKW +LIEA+ DVKTTD + LR+F I FTK+  NQVK+  YA++S IR IR+KM EI+  +A SCDL+  V K I EVIGRE+EKAT  I+PL++V+
Sbjct:   27 DWYDIKAPTFFENRNVGKTFVNRSQGLKNADDSLKGRIVEASLADLNKDDEQAYRKFKLKVDGIQGRTCLTNFYGMDFTSDKLRSLVRKWQSLIEAHQDVKTTDGYLLRVFVIAFTKKRANQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPLKDVY 210          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_CAEEL (40S ribosomal protein S3a OS=Caenorhabditis elegans GN=rps-1 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.824e-58
Identity = 114/184 (61.96%), Postives = 138/184 (75.00%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVF 674
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK RVFEVSLGDL N  E  +RK +L AEDVQGKNVLTNF  M+ T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+T Y +TS+IR+IR +M   +  +   CDLK +V K I + IG++IEK  S +YPLQ V+
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVY 209          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.824e-58
Identity = 107/183 (58.47%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 671
            +W+DIKAPS F  R VGKTL+ R+ G K A++GLK RV EV L DL   E+H+ RK++LR ++VQGKN+LTNF G++FTTDKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I PLQN+
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNI 210          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.824e-58
Identity = 107/183 (58.47%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 671
            +W+DIKAPS F  R VGKTL+ R+ G K A++GLK RV EV L DL   E+H+ RK++LR ++VQGKN+LTNF G++FTTDKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I PLQN+
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNI 210          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_LYSTE (40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.523e-58
Identity = 112/186 (60.22%), Postives = 138/186 (74.19%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVF 674
            DWYDIKAPS F  R VGKTLV RTQGTKIASEGLK RV EVSL DL ++   E ++RK RL  EDVQ ++VL NF GM+ TTDKLRS+V+KW TLIEA+VDVKTTD + LR+FCIGFT++     ++T YAQ SQ+R IRRKM  I+  +   CDLK +V K + + I ++IEKA   IYPL +V+
Sbjct:   29 DWYDIKAPSMFTTRQVGKTLVNRTQGTKIASEGLKGRVVEVSLADLQSDADAERSFRKFRLIVEDVQNRSVLCNFHGMDLTTDKLRSMVKKWQTLIEAHVDVKTTDGYLLRIFCIGFTQKDQMSTRKTSYAQHSQVRNIRRKMVSIVTDEITKCDLKGVVTKLVPDAIAKDIEKACQGIYPLHDVY 214          
BLAST of CX290855 vs. ExPASy Swiss-Prot
Match: RS3A_KLULA (40S ribosomal protein S1 OS=Kluyveromyces lactis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.453e-57
Identity = 110/183 (60.11%), Postives = 138/183 (75.41%), Query Frame = 3
Query:  123 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 671
            +WYDIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V VKT+D++ LR+F I FT++  NQVKRT YAQ+S IRQIR+ + EI+  +  +  L  L  K I EVI +EIE AT  I+PLQNV
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSVGLKNASDSLKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRTSYAQSSHIRQIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNV 210          
The following BLAST results are available for this feature:
BLAST of CX290855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RS3A_APLCA1.006e-5861.7540S ribosomal protein S3a OS=Aplysia californica G... [more]
RS3A_CAEBR1.716e-5861.9640S ribosomal protein S3a OS=Caenorhabditis briggs... [more]
RS3A_PICPG2.242e-5859.5640S ribosomal protein S1 OS=Pichia pastoris (strai... [more]
RS3A_BRUMA2.242e-5862.8440S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A_USTMA2.928e-5859.2440S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]
RS3A_CAEEL3.824e-5861.9640S ribosomal protein S3a OS=Caenorhabditis elegan... [more]
RS3A2_DEBHA3.824e-5858.4740S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A1_DEBHA3.824e-5858.4740S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A_LYSTE6.523e-5860.2240S ribosomal protein S3a OS=Lysiphlebus testaceip... [more]
RS3A_KLULA1.453e-5760.1140S ribosomal protein S1 OS=Kluyveromyces lactis G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02027H07SK IF1 Citrus clementina cDNA clone C02027H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290855 ID=CX290855; Name=CX290855; organism=Citrus clementina; type=EST; length=675bp
CGAGGCAGCGGAGCCGTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTC
GGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGC
TGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCATCTT
GTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGT
ACCAAGATTGCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACT
AGGTGATCTTCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGA
GAGCTGAAGATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATG
AATTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTT
GATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGGT
TGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCAGGTTAAGAGGACT
TGCTACGCACAGACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGA
GATCATGGTTGCTCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAA
AGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGC
ATATACCCCTTACAAAATGTGTTCA
back to top