CX290856
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290856 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 3.028e-28 Identity = 70/175 (40.00%), Postives = 110/175 (62.86%), Query Frame = 1 Query: 37 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS--QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 555 +KRI+N +NRQVTF+KRR GL+KKA EL++LCDA+V LI+FS G+LY+F SSSSM +ERYQ+ A E + + + Q+E L+ + + L + R LLGEE+ ++L+ L+ Q++MSL IR+ + Q + + + +L K L+ + N L+++ +Q N Sbjct: 8 IKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDF-SSSSMKSIIERYQE----AGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKFNIAHQRN 177
BLAST of CX290856 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.954e-28 Identity = 75/168 (44.64%), Postives = 105/168 (62.50%), Query Frame = 1 Query: 37 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 540 +KRIEN +RQVTF+KRR GLLKKA+ELSVLCDAEVA+I+FS GKL+EF SS+SM KTL RY + P ++ + + + L LK LQ ++ G+ L L+ KEL+ LE+QL+ SL +R + + L E + KEQ N+TL++++ E Sbjct: 8 IKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF-SSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDL-LKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQE 173
BLAST of CX290856 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 6.745e-28 Identity = 74/174 (42.53%), Postives = 108/174 (62.07%), Query Frame = 1 Query: 37 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 555 +++I++ +RQVTF+KRR GL+KKA EL++LCDAEV LIIFSN KLY+F +SSS+ T+ER+ N E A E+ Q+E L+ +LQ + R L G EL L+ KEL+++E QL+MSL+ IR R Q + + + EL K L+ N L +++ +Q N Sbjct: 8 IQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDF-ASSSVKSTIERF---NTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQRIHQEN 177
BLAST of CX290856 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.151e-27 Identity = 70/167 (41.92%), Postives = 104/167 (62.28%), Query Frame = 1 Query: 37 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 534 ++RI+N +RQVTF+KRRNGLLKKA ELS+LCDAEV L++FS+ G+LYEF SS++M ++RY A E + E+ Q+E L+ + LQ S + L+GEEL L ++L+ LE +L++SL+ IR + + + EL K L+ + N L + L Sbjct: 8 IRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEF-SSTNMKTVIDRYT----NAKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSL 169
BLAST of CX290856 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.503e-27 Identity = 69/151 (45.70%), Postives = 100/151 (66.23%), Query Frame = 1 Query: 37 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 489 +KRI+N +RQVTF+KRR+GL KKA ELS+LCDAEV L++FS+ +LY+F +SSSM +ERY + P ++A +L QQE L+ + LQ R LLG++L L+ ++L++LE +L+MSLK IR + M+D + EL K Sbjct: 8 IKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDF-ASSSMKSIIERYNETKED-PHQTMNASSEAKL-WQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155
BLAST of CX290856 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.710e-27 Identity = 70/173 (40.46%), Postives = 105/173 (60.69%), Query Frame = 1 Query: 37 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKC-NYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQ 549 +KRIEN NRQVTF+KRR GLLKKA EL+VLCDA V ++IFS+ GK++E+CS + L+ L E+YQ N E N + LE++ ++K E L+ R G++L L ++ LE+QL+ S+ ++R+ + Q + L L+ KEQ+L + N L + + E Q Sbjct: 8 IKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHATNSHFEEINHDQQILLEMT------RMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINENQQ 174
BLAST of CX290856 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.710e-27 Identity = 74/168 (44.05%), Postives = 106/168 (63.10%), Query Frame = 1 Query: 37 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 540 +KRIEN +RQVTF+KRR+GLLKKA ELSVLCDAEVA+I+FS GKL+E+ SS+ M +TL RY N+ + + + + E+ LK + LQ L G+ L PL KEL+SLE+QL +L +R + + + + L E + KEQ N+TL++++ E Sbjct: 8 IKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY-SSTGMKQTLSRYG--NHQSSSASKAEEDCAEVDI------LKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQE 166
BLAST of CX290856 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 7.458e-27 Identity = 68/185 (36.76%), Postives = 108/185 (58.38%), Query Frame = 1 Query: 37 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNT---LQLNPSAE 582 +KRIENK +RQVTF+KRRNGL++KA +LSVLCDA VAL++ S GKLY F S +++K L+RY K + A + L Q + L + YE L+ L+G + ++ L LE L+ +L R+ +T+ ML + L+ KE++L E N+ L ++ + V ++++P+ + Sbjct: 8 IKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQH---------ADDLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENNHHVGAEAEMEMSPAGQ 183
BLAST of CX290856 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.661e-26 Identity = 68/165 (41.21%), Postives = 104/165 (63.03%), Query Frame = 1 Query: 37 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 531 +++I+N RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+EFC SSSM + LER+ + + + + E L+L ++ ++ R + GEEL L+ +EL+ LE+ L+ L ++ T++ ++ ++ELQ K L + NK L+Q+ Sbjct: 8 IRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFC-SSSMKEVLERHNLQSKNLEKLDQPSLE-LQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQ 170
BLAST of CX290856 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.661e-26 Identity = 66/169 (39.05%), Postives = 104/169 (61.54%), Query Frame = 1 Query: 37 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGP-LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 540 L+RIEN ++RQVTF KRR GLLKKA ELS+LC+A++ +IIFS GKLY+ ++ +M + +ERY+ A +A + +QE + LK LQ+ R + G + +EL +LER L++ + IRS + Q M+ + L+ KE +L AN+ L+++++E Sbjct: 8 LRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYK----SASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVE 172 The following BLAST results are available for this feature:
BLAST of CX290856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 117
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290856 ID=CX290856; Name=CX290856; organism=Citrus clementina; type=EST; length=656bpback to top |