CX290880

Overview
NameCX290880
Unique NameCX290880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.708e-28
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+PL+ YCTLPA CLLTGKFI+P +SN AS++F+GLFISI  T +LE++W GV I+D WRNEQ WVIGG S+H F    G
Sbjct:  766 TSLPLVAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQG 846          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.534e-27
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL+ YC LPA CLLT KFI+P IS +ASL FI LF+SI  TGILE++W GV I++WWRNEQ WVIGG S+H F  + G
Sbjct:  809 TSIPLLAYCILPAICLLTDKFIMPPISTFASLFFISLFMSIIVTGILELRWSGVSIEEWWRNEQFWVIGGISAHLFAVVQG 889          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.321e-27
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL+ YCT+PA CLLTGKFI+P I+N+AS+ F+ LF+SI AT ILE++W GV I+D WRNEQ WVIGG S+H F    G
Sbjct:  830 TSIPLLAYCTIPAVCLLTGKFIIPTINNFASIWFLALFLSIIATAILELRWSGVSINDLWRNEQFWVIGGVSAHLFAVFQG 910          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.240e-26
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL+ YC LPAFCL+T  FI+PEISN ASL F+ LF SI A+ ILE++W  V ++DWWRNEQ WVIGG S+H F    G
Sbjct:  849 TSIPLLAYCMLPAFCLITNTFIIPEISNLASLCFMLLFASIYASAILELKWSDVALEDWWRNEQFWVIGGTSAHLFAVFQG 929          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.377e-17
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSI L+VYC LPA CL +GKFIV  +  +     + + +++    +LE++W G+G+++WWRNEQ W+IGG S+H    + G
Sbjct:  821 TSIFLVVYCFLPALCLFSGKFIVQSLDIHFLSYLLCITVTLTLISLLEVKWSGIGLEEWWRNEQFWLIGGTSAHLAAVVQG 901          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.482e-16
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+ LI+YC LPAF L +G+FIV  +S    +  + + I +    +LE++W G+G+++WWRNEQ W+I G SSH +  + G
Sbjct:  889 TSLFLILYCFLPAFSLFSGQFIVRTLSISFLVYLLMITICLIGLAVLEVKWSGIGLEEWWRNEQWWLISGTSSHLYAVVQG 969          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.646e-16
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSI L+VYC +PA  L +G FIV ++        + + I++ A GILE++W G+ ++DWWRNEQ W+I G S+H +  + G
Sbjct:  927 TSIFLLVYCFIPALSLFSGFFIVQKLDIAFLCYLLTMTITLVALGILEVKWSGIELEDWWRNEQFWLISGTSAHLYAVVQG 1007          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.225e-15
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSI LIVYC LPA  L +G+FIV  ++    +  + + I++    +LE++W G+ +++WWRNEQ W+IGG S+H    L G
Sbjct:  928 TSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSAHLAAVLQG 1008          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.905e-15
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIV----PEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+ LI+YC LPA  L +G+FIV    P   +Y  L+ I L +      +LE++W G+G+++WWRNEQ WVIGG S+H    L G
Sbjct:  797 TSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLC----LLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQG 877          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.905e-15
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIV----PEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+ LI+YC LPA  L +G+FIV    P   +Y  L+ I L +      +LE++W G+G+++WWRNEQ WVIGG S+H    L G
Sbjct:  797 TSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLC----LLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQG 877          
The following BLAST results are available for this feature:
BLAST of CX290880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CESA8_ARATH8.708e-2864.20Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESA7_ARATH2.534e-2765.43Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA4_ARATH4.321e-2764.20Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESAA_ARATH6.240e-2662.96Probable cellulose synthase A catalytic subunit 10... [more]
CSLD1_ARATH2.377e-1743.21Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLD4_ARATH4.482e-1643.21Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD3_ORYSJ7.646e-1643.21Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLD2_ARATH2.225e-1543.21Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLD5_ORYSJ2.905e-1545.88Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI2.905e-1545.88Putative cellulose synthase-like protein D5 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC03001C04Rv OF1 Citrus clementina cDNA clone C03001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290880 ID=CX290880; Name=CX290880; organism=Citrus clementina; type=EST; length=251bp
GACCTCCATTCCTTTGATTGTTTACTGTACGCTACCTGCCTTCTGCCTTC
TCACTGGGAAATTCATTGTTCCTGAGATTAGCAACTATGCTAGTCTCGTC
TTTATTGGTCTCTTCATATCTATTGCTGCAACTGGTATCCTTGAGATGCA
GTGGGGTGGTGTTGGCATAGATGATTGGTGGAGAAACGAGCAGCTCTGGG
TGATTGGAGGTGCTTCCTCGCACTTTTTTTGCTCTCTTCCAGGGCCTACT
A
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