CX290883

Overview
NameCX290883
Unique NameCX290883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.639e-34
Identity = 67/121 (55.37%), Postives = 92/121 (76.03%), Query Frame = 1
Query:   58 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMDS 420
            EYNG + VAM GKNC AIASD RLGVQ  ++  +F ++  + D+ ++GL+GLATD QTLY+   ++  LY+ REER ++P+TFA+LVS+ LYEKRFGPYF  P +AG+S+++ PFIC  DS
Sbjct:    5 EYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDS 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_DROME (Proteasome subunit beta type-3 OS=Drosophila melanogaster GN=Prosbeta3 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 64/120 (53.33%), Postives = 89/120 (74.17%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDED-KPFICTMD 417
            YNG  +VAM GK+C AIA+D R G+Q QTI+TDF+++  I  R+F+GL+GL TD  T+  RL+FR  LY+ RE R+M P+ F++++S+ LYE RFGPYF +P +AGL  +  +PFIC MD
Sbjct:    6 YNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPFICNMD 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_CAEEL (Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.445e-31
Identity = 55/120 (45.83%), Postives = 88/120 (73.33%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMDS 420
            Y G  +VAM G  C  IASD R+G Q+ TIATD +++ K+ D++++GL+G  +D++T+ ++++FR  LY+LRE R++KP+  + ++S L Y+ RFG YF +P +AGL D +KP+IC MD+
Sbjct:    6 YTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDT 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_TRYBB (Proteasome subunit beta type-3 OS=Trypanosoma brucei brucei GN=PSB3 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.242e-26
Identity = 54/120 (45.00%), Postives = 84/120 (70.00%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDE-DKPFICTMD 417
            Y+G + +AM GK CF + SD RLG QL+TI+ +  ++  I+D + +GL+GL TD QT  Q++ FR ++Y+LREERD+  + FA+LVS++LYE RFGP+F +P I  +  +  + ++C  D
Sbjct:    6 YSGGSCLAMAGKECFVVISDNRLGEQLKTISMEVPKLHVINDGIVMGLTGLRTDQQTFAQKVNFRTEMYKLREERDINGKAFAALVSSMLYEARFGPWFVEPVIGTIDRKTGEVYLCATD 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_YEAST (Proteasome component PUP3 OS=Saccharomyces cerevisiae GN=PUP3 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.901e-25
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 1
Query:   64 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGL-SDEDKPFICTMD 417
            NG  +VAM GK+C AIA D RLG Q   ++  F++I   +  +F+G++GLATD  TL +   ++  LY+L+EER ++PETF  LVS+ LYE+RFGPYF  P +AG+ S   KPFI   D
Sbjct:    8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFH-YGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFD 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 51/122 (41.80%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   58 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIAT-DFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMDS 420
            EYNGSAL+ + G +C A+A+D+RLG   QT+   + +RI ++     +GL+GL TD  T Y+++  +  LY L+E+R+++P   A ++S+ LY+ RFGPYF  P IAG   + KP++  MD+
Sbjct:    6 EYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDT 127          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   64 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMDS 420
            NG   VA+ G +   IA+D R+      ++ D+ +I K+ DR  +  SG   D + L + L  RH +YQ +  + M     A L+S  LY KRF PY+    + GL +E K  + T D+
Sbjct:   14 NGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDA 132          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.915e-13
Identity = 40/121 (33.06%), Postives = 60/121 (49.59%), Query Frame = 1
Query:   58 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMDS 420
            E NG   VA+ G +   +A+D RL V    +  D  +I ++ D+  +  SG   D + L++ L  R  LYQ +  + M     A L+S  LY KRF PY+    + GL  E K  + T D+
Sbjct:   10 ENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDA 130          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 38/119 (31.93%), Postives = 58/119 (48.74%), Query Frame = 1
Query:   64 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMDS 420
            NG   VA+ G +   IA+D R+      +  D+ +I K+ D+  +  SG   D + L + L  RH +YQ +  + M       L+S  LY KRF PY+    + GL  E K  + T D+
Sbjct:   14 NGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDA 132          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB1_SCHPO (Probable proteasome subunit beta type-1 OS=Schizosaccharomyces pombe GN=pam1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 45/119 (37.82%), Postives = 60/119 (50.42%), Query Frame = 1
Query:   64 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQ-RISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMD 417
            NG   VA+ G     +A D R  V    I T FQ R+ ++ D L IG SG   D+  L +R+  R  LY    ER M  ++ A +V  LLY KRF PY+    +AG+  E K  I + D
Sbjct:   12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFD 129          
The following BLAST results are available for this feature:
BLAST of CX290883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSB3_SCHPO1.639e-3455.37Probable proteasome subunit beta type-3 OS=Schizos... [more]
PSB3_DROME2.003e-3253.33Proteasome subunit beta type-3 OS=Drosophila melan... [more]
PSB3_CAEEL6.445e-3145.83Proteasome subunit beta type-3 OS=Caenorhabditis e... [more]
PSB3_TRYBB6.242e-2645.00Proteasome subunit beta type-3 OS=Trypanosoma bruc... [more]
PSB3_YEAST6.901e-2548.74Proteasome component PUP3 OS=Saccharomyces cerevis... [more]
PSB3_GIALA1.537e-2441.80Proteasome subunit beta type-3 OS=Giardia lamblia ... [more]
PSB1_ARATH7.158e-1433.61Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ7.915e-1333.06Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB1_PETHY1.350e-1231.93Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1_SCHPO5.130e-1237.82Probable proteasome subunit beta type-1 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionC03001C07Rv OF1 Citrus clementina cDNA clone C03001C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290883 ID=CX290883; Name=CX290883; organism=Citrus clementina; type=EST; length=421bp
CCCAACTGAACTGAACTCGCATCAAGTCACTCTACAACTATAATTATGTC
TATCACTGAGTACAATGGGAGCGCACTCGTTGCGATGGTCGGAAAGAACT
GCTTTGCCATTGCCAGCGATCGGCGCCTCGGCGTTCAGCTTCAGACAATA
GCCACTGATTTTCAGCGAATTTCCAAAATTCACGATCGCCTTTTTATCGG
CCTCTCTGGACTCGCCACTGATTCCCAGACCTTGTATCAAAGGCTGGTGT
TTCGTCACAAATTGTATCAGCTGCGAGAGGAAAGGGACATGAAGCCTGAA
ACTTTTGCTAGCTTAGTCTCTGCTTTGCTTTATGAGAAAAGGTTTGGCCC
TTACTTCTGTCAACCTGCTATTGCTGGATTGAGTGATGAAGACAAGCCCT
TTATCTGCACAATGGACTCAA
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