CX290883

Overview
NameCX290883
Unique NameCX290883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMD 417
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+    I GL +E K  + + D
Sbjct:   35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFD 153          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMD 417
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+    I GL +E K  + + D
Sbjct:   34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFD 152          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMD 417
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+    I GL +E K  + + D
Sbjct:   35 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFD 153          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMD 417
            +NG  ++A+ G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+    I GL +E K  + + D
Sbjct:   34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFD 152          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 36/119 (30.25%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMD 417
            +NG  ++A+ G++   +ASD RL       + D  +  K+ D   IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+    I GL +E +  + + D
Sbjct:   31 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFD 149          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 36/119 (30.25%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMD 417
            +NG  ++A+ G++   +ASD RL       + D  +  K+ D   IG SG   D  TL + +  R K+Y+    + M     A+++S +LY +RF PY+    I GL +E +  + + D
Sbjct:   32 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFD 150          
The following BLAST results are available for this feature:
BLAST of CX290883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSB1_HUMAN1.143e-1131.09Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PSB1_MOUSE1.493e-1131.09Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]
PSB1_BOVIN1.493e-1131.09Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_RAT1.949e-1131.09Proteasome subunit beta type-1 OS=Rattus norvegicu... [more]
PSB1B_CARAU7.408e-1130.25Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU7.408e-1130.25Proteasome subunit beta type-1-A OS=Carassius aura... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03001C07Rv OF1 Citrus clementina cDNA clone C03001C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290883 ID=CX290883; Name=CX290883; organism=Citrus clementina; type=EST; length=421bp
CCCAACTGAACTGAACTCGCATCAAGTCACTCTACAACTATAATTATGTC
TATCACTGAGTACAATGGGAGCGCACTCGTTGCGATGGTCGGAAAGAACT
GCTTTGCCATTGCCAGCGATCGGCGCCTCGGCGTTCAGCTTCAGACAATA
GCCACTGATTTTCAGCGAATTTCCAAAATTCACGATCGCCTTTTTATCGG
CCTCTCTGGACTCGCCACTGATTCCCAGACCTTGTATCAAAGGCTGGTGT
TTCGTCACAAATTGTATCAGCTGCGAGAGGAAAGGGACATGAAGCCTGAA
ACTTTTGCTAGCTTAGTCTCTGCTTTGCTTTATGAGAAAAGGTTTGGCCC
TTACTTCTGTCAACCTGCTATTGCTGGATTGAGTGATGAAGACAAGCCCT
TTATCTGCACAATGGACTCAA
back to top