CX290884

Overview
NameCX290884
Unique NameCX290884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8343 contig Ccv1_Contig8343:1019..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: SDCS_STAAC (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain COL) GN=sdcS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.132e-30
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   65 DGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G
Sbjct:  329 DGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: SDCS_STAA8 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain NCTC 8325) GN=sdcS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.132e-30
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   65 DGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G
Sbjct:  329 DGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: SDCS_STAA3 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain USA300) GN=sdcS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.132e-30
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   65 DGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G
Sbjct:  329 DGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: SDCS_STAAW (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MW2) GN=sdcS PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.785e-30
Identity = 62/158 (39.24%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   65 DGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            DGT ++ ++ LLF+IP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G
Sbjct:  329 DGTIAIFISILLFVIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: SDCS_STAAS (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MSSA476) GN=sdcS PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.785e-30
Identity = 62/158 (39.24%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   65 DGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            DGT ++ ++ LLF+IP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G
Sbjct:  329 DGTIAIFISILLFVIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: SDCS_STAAB (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sdcS PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.785e-30
Identity = 62/158 (39.24%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   65 DGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            DGT ++ ++ LLF+IP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G
Sbjct:  329 DGTIAIFISILLFVIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: S13A4_HUMAN (Solute carrier family 13 member 4 OS=Homo sapiens GN=SLC13A4 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.637e-30
Identity = 64/188 (34.04%), Postives = 109/188 (57.98%), Query Frame = 2
Query:   26 IPGWGALFNDRA--GDGTASVVMATLLFIIPSMKQ---------------KGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            +PGW + F  +    D T SV +  LLF+IP+ K                  E ++ W   +K +PW I++L+G G+A+A G ++SGL+  +   +  L + P  A+  + C++ +I+TEF SN AT T+ LP+L  +++T+H++PL  ++P  +   F+ +LP G P N + F+ GH +I+DM+K G
Sbjct:  398 VPGWDSFFEKKGYRTDATVSVFLGFLLFLIPAKKPCFGKKNDGENQEHSLGTEPIITWKDFQKTMPWEIVILVGGGYALASGSKSSGLSTWIGNQMLSLSSLPPWAVTLLACILVSIVTEFVSNPATITIFLPILCSLSETLHINPLYTLIPVTMCISFAVMLPVGNPPNAIVFSYGHCQIKDMVKAG 585          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: S13A5_RAT (Solute carrier family 13 member 5 OS=Rattus norvegicus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.750e-30
Identity = 71/192 (36.98%), Postives = 110/192 (57.29%), Query Frame = 2
Query:   26 IPGWGALF-----NDRAGDGTASVVMATLLFIIPSMKQKGE----------------KLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            +PGW ++           D T ++ +A LLFI+PS K K                   L++W   + K+PW I+LLLG GFA+A G  TSGL++ +++ ++ L +     I  I+  I A+ TE TSN ATTTL LP+   +A+++ +HPL +M+P  + A  +F+LP  TP N + F  GH+++ DM+KTG
Sbjct:  342 MPGWLSIAWIEGNTKHVTDATVAIFVAILLFIVPSQKPKFNFSRQTEEERKTPFYPPPLLNWKVTQEKVPWGIVLLLGGGFAMAKGCETSGLSEWMARQMEPLSSVRPAIITLILSCIVAMTTECTSNVATTTLFLPIFASMARSIGIHPLYVMIPCTLSASLAFMLPVATPPNAIVFAYGHLKVIDMVKTG 533          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: S13A2_RABIT (Solute carrier family 13 member 2 OS=Oryctolagus cuniculus GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.203e-30
Identity = 74/188 (39.36%), Postives = 111/188 (59.04%), Query Frame = 2
Query:   32 GWGAL-FNDRAG-----DGTASVVMATLLFIIPS----MKQKGEK---------LMDWNKC-KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            GWG L F+D +G     DG+AS+++   LF++PS    + Q  +          L++W    KK+PWNI+LLLG G+A+A G   SGL+  L   L  L+  P  A   I+CL+ A  TE TSN ATTTL+LP+L  +A+ + +HPL +M+P  + +  +F+LP  TP N + F+ G + + DM + G
Sbjct:  356 GWGNLVFSDASGRVMVSDGSASILIGVFLFMVPSKIPGLTQDPDNPGRLKAPPALLNWKLVNKKMPWNIVLLLGGGYALAKGSEESGLSQWLGNKLMPLQHVPPPATVFIICLLVATFTECTSNAATTTLLLPILASMAQAICLHPLYVMLPCTLASSLAFMLPVATPPNAIVFSFGGLRVSDMARAG 543          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: S13A5_MOUSE (Solute carrier family 13 member 5 OS=Mus musculus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.357e-29
Identity = 69/174 (39.66%), Postives = 101/174 (58.05%), Query Frame = 2
Query:   65 DGTASVVMATLLFIIPSMKQKGE----------------KLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            D T ++ +A LLFIIPS K K                   L+DW   + K+PW+I+LLLG GFA+A G  TSGL+  ++  ++ L       I  I+  + A+ TE TSN ATTTL LP+   +A+++ +HPL +M+P  + A  +F+LP  TP N + F  GH+ + DM+KTG
Sbjct:  360 DATVAIFVAILLFIIPSQKPKFNFSSQTEEERKTPFYPPALLDWKVAQEKVPWDIVLLLGGGFAMAKGCETSGLSKWMAAQMEPLRLVKPAVITLILSCLVAMTTECTSNVATTTLFLPIFASMARSIGIHPLYVMIPCTMSASLAFMLPVATPPNAIVFAYGHLRVVDMMKTG 533          
The following BLAST results are available for this feature:
BLAST of CX290884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SDCS_STAAC2.132e-3039.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA82.132e-3039.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA32.132e-3039.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAW2.785e-3039.24Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAS2.785e-3039.24Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAB2.785e-3039.24Sodium-dependent dicarboxylate transporter sdcS OS... [more]
S13A4_HUMAN3.637e-3034.04Solute carrier family 13 member 4 OS=Homo sapiens ... [more]
S13A5_RAT4.750e-3036.98Solute carrier family 13 member 5 OS=Rattus norveg... [more]
S13A2_RABIT6.203e-3039.36Solute carrier family 13 member 2 OS=Oryctolagus c... [more]
S13A5_MOUSE2.357e-2939.66Solute carrier family 13 member 5 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC03001C09Rv OF1 Citrus clementina cDNA clone C03001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290884 ID=CX290884; Name=CX290884; organism=Citrus clementina; type=EST; length=535bp
GATGACAAGATCAATAACAGATGACATTCCAGGTTGGGGAGCACTCTTCA
ATGACCGTGCTGGTGATGGAACTGCTAGTGTTGTGATGGCAACATTGTTG
TTCATAATTCCGAGCATGAAGCAAAAGGGAGAAAAATTGATGGATTGGAA
CAAATGCAAGAAGCTACCTTGGAACATTATATTGCTTTTAGGGGCTGGCT
TTGCTATAGCTGATGGAGTCAGGACTAGCGGTCTTGCTGATGATCTGTCA
AAAGCATTGGATTTCCTGGAGGCGGCGCCATATTTAGCCATTGCACCTAT
CGTATGTCTGATTAGCGCGATTATTACTGAATTCACATCAAATAATGCCA
CAACAACTCTCGTTCTTCCACTTCTGATCCAAATAGCAAAAACTATGCAT
GTTCATCCATTGCTTCTTATGGTTCCTGGAGCAATTGGAGCACAATTTTC
TTTCTTGTTGCCGACTGGAACCCCTTCAAATATTGTTGGATTCACAACCG
GGCACATCGAAATTCAAGATATGATCAAGACAGGG
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