CX290897

Overview
NameCX290897
Unique NameCX290897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: BETB_BURS3 (Betaine aldehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=betB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.307e-19
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  204 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS 491
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W  MTA +RS+I+ R  DLL   NDE+AALET D GKP  ++
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAALETRDTGKPIGET 101          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: BETB_BURM1 (Betaine aldehyde dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=betB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.307e-19
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  204 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS 491
            +L I G +VD+ SGKTF T DP TGD++  V +  A DV+RA+++A++   E  W  MTA +RS+I+ R  +LL   NDE+AALET D GKP  ++
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGDLLAQVQQASAADVDRAIASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAALETRDTGKPIAET 101          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: BETB_BURCJ (Betaine aldehyde dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=betB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.246e-18
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  204 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS 491
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W  MTA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGET 101          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: BETB_BURCC (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=betB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.246e-18
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  204 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS 491
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W  MTA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WATMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGET 101          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: AL1L2_MOUSE (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Mus musculus GN=Aldh1l2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.246e-18
Identity = 44/105 (41.90%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  186 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQT 500
            VK+ Y Q  INGQFVD+  G+T+ T++P  G  I  V+     DV+RAV+AA+ AF+ G W RM A +R +++ R ADL+E + +E+A +E  D+G  +  + +T
Sbjct:  439 VKIPY-QCFINGQFVDAEDGETYATVNPTDGTTICRVSHASLADVDRAVAAAKDAFENGEWGRMNARDRGRLMYRLADLMEENQEELATIEALDSGAVYTLALKT 542          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 1.628e-18
Identity = 46/100 (46.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  186 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPF 482
            +K+ +T++ IN ++ DS SGK FP L+P T +VI HV EG+  DV++AV AAR+AF  G PW  M A ER +++ + ADL+ER    +A +E  + GK F
Sbjct:   16 LKIQHTKIFINNEWHDSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVF 115          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: FTHFD_XENLA (10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.126e-18
Identity = 41/105 (39.05%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  186 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQT 500
            VK+ + QL INGQF+D+  GK++ T++P  G  I  V+  +  D++RAV+AA++AF+ G W +M   +R +++ R ADL+E H +E+A +E+ D+G  +  + +T
Sbjct:  418 VKIPH-QLFINGQFMDAEGGKSYDTINPTDGTAICKVSLAQISDIDRAVAAAKEAFENGEWGKMNPRDRGRLLYRLADLMEEHQEELATIESIDSGAVYTLALKT 521          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.126e-18
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  204 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS 491
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W  +TA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++
Sbjct:    8 RLYIGGAYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQQGQRE--WAALTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGET 101          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: AL1L2_HUMAN (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Homo sapiens GN=ALDH1L2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.126e-18
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  186 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQT 500
            VK+ Y Q  INGQF D+  GKT+ T++P  G  I  V+     DV++AV+AA+ AF+ G W RM A ER +++ R ADLLE + +E+A +E  D+G  +  + +T
Sbjct:  439 VKMPY-QCFINGQFTDADDGKTYDTINPTDGSTICKVSYASLADVDKAVAAAKDAFENGEWGRMNARERGRLMYRLADLLEENQEELATIEALDSGAVYTLALKT 542          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: BETB_KLEP3 (Betaine aldehyde dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.777e-18
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  204 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTE 503
            QL ING +  + SG+TF T++P TG+V+  V     EDV+RAV +A++   +  W  MTA ERS+I+ R  DLL + NDE+A LET D GKP  ++A  +
Sbjct:    8 QLYINGGYTSATSGRTFETINPATGEVLATVQAAGREDVDRAVESAQRG--QKIWAAMTAMERSRILRRAVDLLRQRNDELARLETLDTGKPLSETAAVD 105          
The following BLAST results are available for this feature:
BLAST of CX290897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
BETB_BURS37.307e-1948.96Betaine aldehyde dehydrogenase OS=Burkholderia sp.... [more]
BETB_BURM17.307e-1947.92Betaine aldehyde dehydrogenase OS=Burkholderia mul... [more]
BETB_BURCJ1.246e-1847.92Betaine aldehyde dehydrogenase OS=Burkholderia cep... [more]
BETB_BURCC1.246e-1847.92Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
AL1L2_MOUSE1.246e-1841.90Probable 10-formyltetrahydrofolate dehydrogenase A... [more]
AL1A1_RAT1.628e-1846.00Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
FTHFD_XENLA2.126e-1839.0510-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
BETB_BURVG2.126e-1846.88Betaine aldehyde dehydrogenase OS=Burkholderia vie... [more]
AL1L2_HUMAN2.126e-1842.86Probable 10-formyltetrahydrofolate dehydrogenase A... [more]
BETB_KLEP32.777e-1846.00Betaine aldehyde dehydrogenase OS=Klebsiella pneum... [more]

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Properties
Property NameValue
Genbank descriptionC03001D11Rv OF1 Citrus clementina cDNA clone C03001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290897 ID=CX290897; Name=CX290897; organism=Citrus clementina; type=EST; length=511bp
TTGTGATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACG
TCTTCTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAG
AGCTGCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGCTTCTTCTG
CTGCTGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTAT
ACTCAGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAAC
GTTTCCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTG
AAGGTGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCA
TTTGATGAAGGACCGTGGCCTAGGATGACTGCTTATGAAAGGTCAAAAAT
AATTTTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAG
CCCTTGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACT
GAAGCACCAAT
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