CX290916

Overview
NameCX290916
Unique NameCX290916
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14735 contig Ccv1_Contig14735:12..553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290916 vs. ExPASy Swiss-Prot
Match: PERX_TOBAC (Lignin-forming anionic peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 9.647e-39
Identity = 80/148 (54.05%), Postives = 105/148 (70.95%), Query Frame = 3
Query:   93 SQAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSL 536
            S AQLS +FY +TCPNV +I+  V+ +   +D R GA +IRLHFHDCFV+GCD SILLD+  T  +EK  AP N  A GF+++D++K A+E  C  VVSCADIL +A+E  V L+ GPSW V  GR+DS TANR+ AN ++P P  +L
Sbjct:   20 SNAQLSATFYDTTCPNVTSIVRGVMDQRQRTDARAGAKIIRLHFHDCFVNGCDGSILLDTDGT-QTEK-DAPANVGAGGFDIVDDIKTALENVCPGVVSCADILALASEIGVVLAKGPSWQVLFGRKDSLTANRSGANSDIPSPFETL 165          
BLAST of CX290916 vs. ExPASy Swiss-Prot
Match: PER58_ARATH (Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.788e-38
Identity = 85/154 (55.19%), Postives = 108/154 (70.13%), Query Frame = 3
Query:   84 GSPSQAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDST--NTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLD 539
            G  S AQL+  FYS+TCPNV  I   ++++A  +D+R+ A ++RLHFHDCFV+GCD S+LLD+   + ++ EK A  N  S  GFEVID++K A+E  C  VVSCADIL IAAE SVAL+GGPS  V LGRRD RTA RA A   LP   +SL+
Sbjct:   18 GVLSNAQLTSDFYSTTCPNVTAIARGLIERASRNDVRLTAKVMRLHFHDCFVNGCDGSVLLDAAPADGVEGEKEAFQNAGSLDGFEVIDDIKTALENVCPGVVSCADILAIAAEISVALAGGPSLDVLLGRRDGRTAIRADAVAALPLGPDSLE 171          
BLAST of CX290916 vs. ExPASy Swiss-Prot
Match: PER2_CUCSA (Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.393e-37
Identity = 79/143 (55.24%), Postives = 100/143 (69.93%), Query Frame = 3
Query:  114 SFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDE 542
            +FY  +CP+V NI+  V+++A  SD R GA LIRLHFHDCFV+GCD S+LL+    + SE  AAP N +  GF +++N+KAAVEKAC  VVSCADIL IA+  SV L+GGP W V LGRRDSR AN   A   LP P  ++ +
Sbjct:    1 TFYDESCPDVSNIVRRVVQQALVSDERAGARLIRLHFHDCFVNGCDGSVLLEDQPGVVSE-LAAPGNANITGFNIVNNIKAAVEKACPGVVSCADILAIASVGSVNLAGGPCWEVQLGRRDSRRANLQGAIDGLPSPFENVTQ 142          
BLAST of CX290916 vs. ExPASy Swiss-Prot
Match: PER11_ARATH (Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.819e-37
Identity = 72/144 (50.00%), Postives = 96/144 (66.67%), Query Frame = 3
Query:  105 LSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSL 536
            L+  +Y STCP V ++I+  ++     D R  A +IRLHFHDCFV GCD S+LLD T T+  EK A+PN NS +G++++D +K  +E  C  VVSCAD+LTI A  +  L GGP W VP+GR+DS+TA+  LA  NLP P   L
Sbjct:   30 LTLDYYKSTCPTVFDVIKKEMECIVKEDPRNAAIIIRLHFHDCFVQGCDGSVLLDETETLQGEKKASPNINSLKGYKIVDRIKNIIESECPGVVSCADLLTIGARDATILVGGPYWDVPVGRKDSKTASYELATTNLPTPEEGL 173          
BLAST of CX290916 vs. ExPASy Swiss-Prot
Match: PER40_ARATH (Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.053e-37
Identity = 72/139 (51.80%), Postives = 97/139 (69.78%), Query Frame = 3
Query:  120 YSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSL 536
            Y ++CP   +I+   ++     D R+ ASL+RLHFHDCFV+GCDAS+LLD T  +  EK A PN NS RGFEVID++K+ +E  C   VSCADIL +AA  SV +SGGP W V +GR+DSRTA++  A   LP P++++
Sbjct:   55 YRNSCPEAESIVYSWVETTVLEDPRMAASLLRLHFHDCFVNGCDASVLLDDTEGLVGEKTAPPNLNSLRGFEVIDSIKSDIESVCPETVSCADILAMAARDSVVVSGGPRWEVEVGRKDSRTASKQAATNGLPSPNSTV 193          
BLAST of CX290916 vs. ExPASy Swiss-Prot
Match: PER20_ARATH (Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.304e-35
Identity = 79/145 (54.48%), Postives = 98/145 (67.59%), Query Frame = 3
Query:  105 LSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLD 539
            L   FY  +CP    I++  ++ A   D R+ ASL+RL FHDCFV GCDAS+LLD+   + SEK A PN NS RGFEVID +K  +E+AC   VSC+DIL +AA  SV L GGP W V LGRRDS  A+ A ANQ +P P++SLD
Sbjct:   30 LLKGFYKESCPLAEEIVKHNIEVAVLKDPRMAASLLRLQFHDCFVLGCDASVLLDTHGDMLSEKQATPNLNSLRGFEVIDYIKYLLEEACPLTVSCSDILALAARDSVFLRGGPWWEVLLGRRDSLKASFAGANQFIPAPNSSLD 174          
BLAST of CX290916 vs. ExPASy Swiss-Prot
Match: PER64_ARATH (Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.224e-35
Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = 3
Query:  105 LSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDE 542
            LSP +Y  TCP   +I+ + +KKA S+D  + A+L+R+HFHDCFV GCD S+LLDS     +EK   P N S   F VIDN K A+E+ C  +VSCADIL++AA  +VALSGGP+WAVP GR+D R  ++A+  + LP P+ ++ +
Sbjct:   23 LSPHYYDHTCPQADHIVTNAVKKAMSNDQTVPAALLRMHFHDCFVRGCDGSVLLDSKGKNKAEK-DGPPNISLHAFYVIDNAKKALEEQCPGIVSCADILSLAARDAVALSGGPTWAVPKGRKDGR-ISKAIETRQLPAPTFNISQ 166          
BLAST of CX290916 vs. ExPASy Swiss-Prot
Match: PER28_ARATH (Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.905e-35
Identity = 75/147 (51.02%), Postives = 100/147 (68.03%), Query Frame = 3
Query:   99 AQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLD 539
            AQL   FYS +CPN   I+E+++++ F+ D  I A+L R+HFHDCFV GCDAS+L+D T +  SEK A P N S RGFE+ID +K A+E  C   VSC+DI+T+A   +V L GGPS+ VP GRRD   +N   AN+ LP P  S++
Sbjct:   21 AQLKFKFYSESCPNAETIVENLVRQQFARDPSITAALTRMHFHDCFVQGCDASLLIDPTTSQLSEKNAGP-NFSVRGFELIDEIKTALEAQCPSTVSCSDIVTLATRDAVFLGGGPSYVVPTGRRDGFVSNPEDANEILPPPFISVE 166          
BLAST of CX290916 vs. ExPASy Swiss-Prot
Match: PER17_ARATH (Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.471e-35
Identity = 71/140 (50.71%), Postives = 96/140 (68.57%), Query Frame = 3
Query:  105 LSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGP 524
            L P FYS TCP   +I+   +KKA   + R  AS++R  FHDCFV+GCDAS+LLD T  +  EK +  N +S R FEV+D++K A+EKAC   VSCADI+ +AA  +VAL+GGP W V LGR+DS TA++  ++  +P P
Sbjct:   23 LRPRFYSETCPEAESIVRREMKKAMIKEARSVASVMRFQFHDCFVNGCDASLLLDDTPNMLGEKLSLSNIDSLRSFEVVDDIKEALEKACPATVSCADIVIMAARDAVALTGGPDWEVKLGRKDSLTASQQDSDDIMPSP 162          
BLAST of CX290916 vs. ExPASy Swiss-Prot
Match: PER57_ARATH (Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.104e-34
Identity = 74/146 (50.68%), Postives = 101/146 (69.18%), Query Frame = 3
Query:   99 AQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSL 536
            AQL   FYS +CP    I+ +++++ F     + A+L+R+HFHDCFV GCDAS+L+DSTN   SEK A PN  S R F++ID +KA +E AC   VSCADI+T+A   SVAL+GGPS+++P GRRD R +N    +  LPGP+ S+
Sbjct:   22 AQLRVGFYSQSCPQAETIVRNLVRQRFGVTPTVTAALLRMHFHDCFVKGCDASLLIDSTN---SEKTAGPNG-SVREFDLIDRIKAQLEAACPSTVSCADIVTLATRDSVALAGGPSYSIPTGRRDGRVSNN--LDVTLPGPTISV 161          
The following BLAST results are available for this feature:
BLAST of CX290916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PERX_TOBAC9.647e-3954.05Lignin-forming anionic peroxidase OS=Nicotiana tab... [more]
PER58_ARATH4.788e-3855.19Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=... [more]
PER2_CUCSA1.393e-3755.24Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV... [more]
PER11_ARATH1.819e-3750.00Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=... [more]
PER40_ARATH4.053e-3751.80Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=... [more]
PER20_ARATH1.304e-3554.48Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=... [more]
PER64_ARATH2.224e-3550.00Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=... [more]
PER28_ARATH2.905e-3551.02Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=... [more]
PER17_ARATH6.471e-3550.71Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=... [more]
PER57_ARATH1.104e-3450.68Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03001F12Rv OF1 Citrus clementina cDNA clone C03001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290916 ID=CX290916; Name=CX290916; organism=Citrus clementina; type=EST; length=542bp
TAGAGAAGTAGTAACTCTTAGCCAAAATGGCTTCACTTCGTTATCTTCTT
GCAGCAGCTCTTGTTGTTGCTTTTGTGCTTGAGGGATCACCATCTCAAGC
TCAACTTTCTCCATCTTTTTATTCTTCCACATGCCCTAATGTATTGAACA
TTATCGAGGATGTGCTTAAGAAAGCGTTCTCGTCCGATATCCGGATCGGT
GCCAGCCTCATCAGGCTTCATTTCCATGACTGTTTTGTTGATGGGTGTGA
TGCATCGATTTTGCTGGACAGCACTAACACCATAGACAGCGAGAAATTTG
CTGCGCCAAATAATAATTCGGCGAGGGGTTTTGAAGTTATTGATAACATG
AAAGCTGCCGTTGAAAAGGCATGTCGAAGGGTTGTTTCCTGCGCTGATAT
TCTTACTATTGCGGCTGAACGATCCGTTGCTTTGTCAGGGGGTCCGTCAT
GGGCAGTTCCATTGGGAAGAAGAGACAGCAGAACGGCAAACAGAGCTCTT
GCAAATCAGAATCTTCCAGGACCATCTAATTCTCTTGATGAG
back to top