CX290923

Overview
NameCX290923
Unique NameCX290923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:1..344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.431e-16
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 2
Query:   62 NSVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEF---GRTDT-KREVAAFFAHVTHETT-------------DFCFVEEISKTNP-YCTPTPQYPCANGKFY 343
            + VA +++P  FD  + ++    C  KGFYT DAF++A ++YP+F   G  DT KREVAAF A  +HETT              +CF EE +   P YC P P++PCA GK Y
Sbjct:   74 SGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKY 186          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.481e-16
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 2
Query:   59 QNSVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFY 343
            + SV+ +V+   FD  + ++    C+ KGFYT DAF++A +++P FG T +    KREVAAF A  +HETT              +CF +E   ++ YCTP+ Q+PCA GK Y
Sbjct:   22 RGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRY 134          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.853e-16
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFY 343
            +  +++   FD  +K++    C  KGFYT DAF++A  S+P FG T +    KRE+AAF    +HETT              +CF++E + ++ YC P+P+YPCA GK Y
Sbjct:    2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSY 111          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.853e-16
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 2
Query:   68 VADLVTPEFF-DGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT-DT---KREVAAFFAHVTHETT-------------DFCFVEEISKTNPYCTPTPQYPCANGKFY 343
            +  L+T   F D +K++   +C GKGFYT DAFI+A  ++P FG T DT   KRE+AAF A  +HETT              +C++ E      YC P+ Q+PCA G+ Y
Sbjct:   65 IGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKY 174          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   89 EFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT-DT---KREVAAFFAHVTHETT-------------DFCFVEEISKTNPYCTPTPQYPCANGKFY 343
            +F D +K++    C  +GFYT DAFI+A  S+P FG T DT   K+E+AAFF   +HETT              +CF +E + ++ YC+P+ ++PCA+GK Y
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSY 180          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFY 343
            V+ +V+   FD  + ++    C+ KGFYT DAF++A S++  FG T   DT KREVAAF A  +HETT              +CF +E   T+ YCTP+ Q+PCA GK Y
Sbjct:   77 VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSY 186          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   89 EFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT-DT---KREVAAFFAHVTHETT-------------DFCFVEEISKTNPYCTPTPQYPCANGKFY 343
            +F D +K++  A C  +GFYT +AFI+A  S+P FG T DT   K+EVAAFF   +HETT              +CF +E +  + YC P+  +PCA+GK Y
Sbjct:   94 QFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRY 195          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.955e-15
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2
Query:   65 SVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETT-------------DFCFVEEISKTNPYCTPTPQYPCANGKFY 343
            SV+ +++   FD  + ++    C+ KGFYT DAF++A +++P FG T +    KR+VAAF A  +HETT              +CF +E      YCTP+ Q+PCA GK Y
Sbjct:   24 SVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRY 134          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.955e-15
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFG----RTDTKREVAAFFAHVTHETT-------------DFCFVEEISKTNPYCTPTPQYPCANGKFY 343
            +  +++   FD  +K++    C+GKGFY+ +AFI+A  S+P FG     T  KRE+AAFFA  +HETT              +C++ E      YCTP+ Q+PCA G+ Y
Sbjct:   75 LGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKY 184          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.955e-15
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFG----RTDTKREVAAFFAHVTHETT-------------DFCFVEEISKTNPYCTPTPQYPCANGKFY 343
            +  +++   FD  +K++    C+GKGFY+ +AFI+A  S+P FG     T  KRE+AAFFA  +HETT              +C++ E      YCTP+ Q+PCA G+ Y
Sbjct:   80 LGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKY 189          
The following BLAST results are available for this feature:
BLAST of CX290923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
CHI3_ORYSJ3.431e-1642.48Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_HORVU4.481e-1639.8226 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIT_CARPA5.853e-1638.18Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_VITVI5.853e-1640.91Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_BRANA1.304e-1541.18Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_HORVU1.304e-1542.7326 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIB_ARATH3.794e-1542.16Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIC_SECCE4.955e-1538.74Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_TOBAC4.955e-1538.18Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC4.955e-1538.18Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC03001G07Rv OF1 Citrus clementina cDNA clone C03001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290923 ID=CX290923; Name=CX290923; organism=Citrus clementina; type=EST; length=344bp
TCTTTTCCTGGGGTTACTTCTACTTGCCTTAGCCAACATTCCCAGAAATG
TAGTGTGTCAAAACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGAC
GGCATTAAGAATCAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATAC
AAGAGATGCATTTATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAA
CTGATACTAAGCGTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAA
ACAACAGATTTTTGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTG
TACACCGACTCCTCAATATCCATGTGCCAATGGTAAATTCTACT
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