CX290923

Overview
NameCX290923
Unique NameCX290923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:1..344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD--------------FCFVEEISKTNPYCTPTPQYPCANGKFY 343
            + +L++ E F+  + ++    C  +GFYT DAFI+A  S+P F  T      KRE+AAF A  +HETT               +C+  E++  + YC   P YPCA GK Y
Sbjct:   74 LTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQY 184          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.910e-13
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKG-FYTRDAFISALSSYPEFGRT-DT---KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFY 343
            +  +++   FD  +K++    C+GK  FY+ +AFI+A  S+  FG T DT   KRE+AAFFA  +HETT              +CF+ E      YCTP+ Q+PCA G+ Y
Sbjct:   78 IGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKY 188          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.910e-13
Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 2
Query:   77 LVTPEFFDGIKNQA-PATCEGKG-FYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFY 343
            +++   FD + N      C+GK  FY+ +AFISA  S+P FG T      KRE+AAF A  +HETT              +CF+ E      YCTP+ Q+PCA G+ Y
Sbjct:   71 VISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKY 178          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 2
Query:   77 LVTPEFFDGIKNQA-PATCEGKG-FYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFY 343
            +++   FD + N      C+GK  FY+ +AF++A  S+P FG T      KRE+AAF A  +HETT              +CF+ E      YCTP+ Q+PCA G+ Y
Sbjct:   75 VISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKY 182          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 43/114 (37.72%), Postives = 60/114 (52.63%), Query Frame = 2
Query:   62 NSVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETT-------------DFCFVEEISKT--NPYCTPTPQYPCANGKFY 343
            + VA +V+   FD  + ++  A C  K FYT DAF++A +++P F  T      KREVAAF A  +HETT              +CF EE +    + YC  + Q+PCA GK Y
Sbjct:   77 SGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKY 190          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 40/111 (36.04%), Postives = 63/111 (56.76%), Query Frame = 2
Query:   65 SVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEF---GRTDT-KREVAAFFAHVTHETT-------------DFCFVEEISKTNPYCTPTPQYPCANGKFY 343
            +++ L++ + F+  +K++    C+GK FYT DAF+SA  ++P F   G T T KRE+AAF    +HETT              +CF+ E    + YC  + ++PCA+GK Y
Sbjct:   67 TLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLRE-QNPSTYCQASSEFPCASGKQY 176          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 2
Query:   77 LVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETT--------------DFCFVEEISKTNPYCTPTPQYPCANGKFY 343
            L+T E FD  + ++    C  +GFYT DAFI+A  S+P F  T      KREVAAF A  +HETT               +C+  E++  + YC   P YPCA GK Y
Sbjct:   75 LITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YCQWDPNYPCAPGKQY 181          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 46/120 (38.33%), Postives = 57/120 (47.50%), Query Frame = 2
Query:   38 IPRNVVCQNSVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETT-------------DFCFVEEISKTNPYCTPTPQYPCANGKFY 343
            IP        V  LV    FD  +K +    C G GFYT DAFI+A  S+  FG T      K+E+AAF A  +HETT              +CFV E +    YC+P   +PCA GK Y
Sbjct:   70 IPTPSTGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSP-KDWPCAPGKKY 188          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD------FCFVEEISKTNPYCTPTPQYPCANGKFY 343
            VA +VT + F+  + ++  A C  +GFY   AF++A  ++P F  T   DT KREVAAF A  +H T+       +C+ E    T+ +C P  ++PCA GK Y
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAY 199          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD------FCFVEEISKTNPYCTPTPQYPCANGKFY 343
            VA +VT + F+  + ++  A C  +GFY   AF++A  ++P F  T   DT KREVAAF A  +H T+       +C+ E    T+ +C P  ++PCA GK Y
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAY 199          
The following BLAST results are available for this feature:
BLAST of CX290923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
CHI1_GOSHI6.057e-1336.04Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI4_SOLTU7.910e-1338.74Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU7.910e-1338.89Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC2.302e-1237.04Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI1_ORYSJ2.302e-1237.72Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_PEA5.127e-1236.04Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_THECC5.127e-1239.81Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIX_PEA1.142e-1138.33Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI7_ORYSJ1.142e-1137.86Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.142e-1137.86Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]

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Properties
Property NameValue
Genbank descriptionC03001G07Rv OF1 Citrus clementina cDNA clone C03001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290923 ID=CX290923; Name=CX290923; organism=Citrus clementina; type=EST; length=344bp
TCTTTTCCTGGGGTTACTTCTACTTGCCTTAGCCAACATTCCCAGAAATG
TAGTGTGTCAAAACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGAC
GGCATTAAGAATCAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATAC
AAGAGATGCATTTATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAA
CTGATACTAAGCGTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAA
ACAACAGATTTTTGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTG
TACACCGACTCCTCAATATCCATGTGCCAATGGTAAATTCTACT
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