CX290969

Overview
NameCX290969
Unique NameCX290969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 9.107e-78
Identity = 142/172 (82.56%), Postives = 154/172 (89.53%), Query Frame = 2
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXK 577
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+  P YS+  Y+EI K
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVK 172          
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 9.107e-78
Identity = 142/172 (82.56%), Postives = 154/172 (89.53%), Query Frame = 2
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXK 577
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+  P YS+  Y+EI K
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGINKMDSTEPPYSQKRYEEIVK 172          
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.210e-77
Identity = 142/173 (82.08%), Postives = 153/173 (88.44%), Query Frame = 2
Query:   62 MGKE-KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXK 577
            MGKE KTHIN+VVIGHVDSGKSTTTGHLIY+ GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KYY TVIDAPGHRDFIKNMITGTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD  T  +++A Y EI K
Sbjct:    1 MGKEDKTHINVVVIGHVDSGKSTTTGHLIYQCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMD--TANWAEARYQEIIK 171          

HSP 2 Score: 31.187 bits (69), Expect = 1.210e-77
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  567 KLXKEVSFYLKXGGYNPEKVPFVPIFG 647
            ++ KE S ++K  G+NP+ V FVPI G
Sbjct:  168 EIIKETSNFIKKVGFNPKAVAFVPISG 194          
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 1.579e-77
Identity = 142/173 (82.08%), Postives = 154/173 (89.02%), Query Frame = 2
Query:   62 MGKE-KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXK 577
            MGKE KTHIN+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KYY TVIDAPGHRDFIKNMITGTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD  T ++S+  ++EI K
Sbjct:    1 MGKEDKTHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMD--TTQWSQTRFEEIIK 171          

HSP 2 Score: 30.0314 bits (66), Expect = 1.579e-77
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  567 KLXKEVSFYLKXGGYNPEKVPFVPIFG 647
            ++ KE   ++K  GYNP  V FVPI G
Sbjct:  168 EIIKETKNFIKKVGYNPAGVAFVPISG 194          
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 1.579e-77
Identity = 142/173 (82.08%), Postives = 154/173 (89.02%), Query Frame = 2
Query:   62 MGKE-KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXK 577
            MGKE K HIN+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KYY TVIDAPGHRDFIKNMITGTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD  T ++S+A ++EI K
Sbjct:    1 MGKEDKAHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMD--TTQWSQARFEEIIK 171          

HSP 2 Score: 30.4166 bits (67), Expect = 1.579e-77
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  567 KLXKEVSFYLKXGGYNPEKVPFVPIFG 647
            ++ KE   ++K  GYNP  V FVPI G
Sbjct:  168 EIIKETKNFIKKVGYNPATVAFVPISG 194          
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.579e-77
Identity = 139/172 (80.81%), Postives = 150/172 (87.21%), Query Frame = 2
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXK 577
            MGKEK H+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KY  TVIDAPGHRDFIKNMITGTSQADCA+L I   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD  T K+S+  ++EI K
Sbjct:    1 MGKEKLHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILTIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD--TTKWSEDRFNEIVK 170          

HSP 2 Score: 33.113 bits (74), Expect = 1.579e-77
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  567 KLXKEVSFYLKXGGYNPEKVPFVPIFG 647
            ++ KE S ++K  GYNP+ V FVPI G
Sbjct:  167 EIVKETSTFIKKVGYNPKTVAFVPISG 193          
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.029e-77
Identity = 142/172 (82.56%), Postives = 154/172 (89.53%), Query Frame = 2
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXK 577
            MGKEK HINIVVIGHVDSGKST+TGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+  P YS+A ++EI K
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSQARFEEIQK 172          
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.650e-77
Identity = 146/190 (76.84%), Postives = 158/190 (83.16%), Query Frame = 2
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXKGGLFLPEEXWIQPRESPF 631
            MGKEK HI++VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA+EM K SFKYAWVLDKLKAERER ITIDIALWKFET K   T+IDAPGHRDFIKNMITGTSQAD AVL+IDSTTGGFEAGISKDGQTREHALLA+TLGVKQMI   NK D  T KYS+A Y+EI K      ++    P + PF
Sbjct:    1 MGKEKVHISLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEASEMGKGSFKYAWVLDKLKAERERCITIDIALWKFETAKSVFTIIDAPGHRDFIKNMITGTSQADAAVLVIDSTTGGFEAGISKDGQTREHALLAYTLGVKQMIVATNKFDDKTVKYSQARYEEIKKEVSGYLKKVGYNPEKVPF 190          
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 2.685e-77
Identity = 139/172 (80.81%), Postives = 150/172 (87.21%), Query Frame = 2
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXK 577
            MGKEK H+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWK ET KY  TVIDAPGHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD  T  +S+A ++EI K
Sbjct:    1 MGKEKAHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKSETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD--TTNWSEARFNEIVK 170          

HSP 2 Score: 32.7278 bits (73), Expect = 2.685e-77
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  567 KLXKEVSFYLKXGGYNPEKVPFVPIFG 647
            ++ KE S ++K  GYNP+ V FVPI G
Sbjct:  167 EIVKETSNFIKKVGYNPKTVAFVPISG 193          
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.520e-77
Identity = 143/190 (75.26%), Postives = 156/190 (82.11%), Query Frame = 2
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXKGGLFLPEEXWIQPRESPF 631
            MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQ+I  CNKMD+  P +S+A + EI        ++    P+  PF
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF 190          
The following BLAST results are available for this feature:
BLAST of CX290969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A1_BOVIN9.107e-7882.56Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A... [more]
EF1A0_XENLA9.107e-7882.56Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A_TRIRE1.210e-7782.08Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_NEUCR1.579e-7782.08Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_SORMA1.579e-7782.08Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_SCHCO1.579e-7780.81Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_ORYLA2.029e-7782.56Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_EUGGR2.650e-7776.84Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_PIRIN2.685e-7780.81Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_CAEEL4.520e-7775.26Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionC03002D01Rv OF1 Citrus clementina cDNA clone C03002D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290969 ID=CX290969; Name=CX290969; organism=Citrus clementina; type=EST; length=649bp
CTTGCTTGCTCTGCGGCTAGGTTTCAATTGTCTCTTCGAAGTTTCAGTTA
ATTTAACAGCCATGGGTAAGGAGAAGACTCACATCAACATTGTGGTGATT
GGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACAA
GCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTG
CTGAGATGAACAAGAGGTCATTCAAGTACGCCTGGGTGCTCGACAAGCTC
AAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTT
CGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTG
ACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTC
CTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGA
TGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGC
AAATGATTTGCTGCTGTAACAAGATGGACGCCNCCACCCCCAAGTACTCA
AAGGCTANGTACGATGAAATTGNGAAAGGAGGTCTCTTTCTACCTGAAGA
ANGGTGGATACAACCCCGAGAAAGTCCCTTTCGTGCCCATCTTTGGTTT
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