CX290978

Overview
NameCX290978
Unique NameCX290978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length295
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15129 contig Ccv1_Contig15129:223..517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.575e-16
Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIK-DGKATYVSRFVRTSRVKQEEFFGGAKAMK-IGDLKGLFGL 292
            FAPV +E P    L V+G +P CL G ++R G NP F P AG+H FDGDGMIH + I  D + +Y  R+ +T+R+ QE   G +   K IG+L G  GL
Sbjct:  105 FAPV-NECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGL 202          
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.509e-16
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRVKQEEFFGGAKAMK-IGDLKGLFGL 292
            F PVP E P   +L V G +P+C+ G +VR G NP   P +G+H FDGDGM+H +R  +G  +Y  RF  T+R+ QE   G     K IG+L G  G+
Sbjct:  187 FFPVP-EKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGI 283          
The following BLAST results are available for this feature:
BLAST of CX290978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NCED6_ARATH1.575e-1646.469-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
NCED9_ARATH3.509e-1643.889-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionC03002D11Rv OF1 Citrus clementina cDNA clone C03002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290978 ID=CX290978; Name=CX290978; organism=Citrus clementina; type=EST; length=295bp
CTTCGCTCCAGTTCCTGACGAGACTCCTCCTACTAAAGACCTCCACGTCA
TCGGCCATCTCCCCGATTGCTTGAATGGGGAGTTTGTCAGGGTTGGTCCT
AATCCCAAGTTTGCCCCTGCGGCCGGATACCACTGGTTTGATGGAGATGG
CATGATTCATGGTCTGCGCATCAAAGACGGAAAGGCTACATATGTCTCCC
GTTTTGTGAGGACTTCACGTGTTAAACAGGAAGAATTTTTCGGAGGTGCT
AAAGCTATGAAGATTGGAGACCTTAAGGGGCTATTTGGATTACTC
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