CX290979

Overview
NameCX290979
Unique NameCX290979
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 41/128 (32.03%), Postives = 60/128 (46.88%), Query Frame = 1
Query:   13 GGVEREKDYPYTGTDGGSCKFDK----SKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKI 378
            GG+  E  YPY    G +C   +    S +   +     + ++ ++  A  V + PV+  + A       Y  GV     CG  LDHGV +VGYG      +    K YW +KNSWG +WGE GY ++
Sbjct:  213 GGLITEAAYPYRAARG-TCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGE-CGTELDHGVAVVGYG------VAEDGKAYWTVKNSWGPSWGEQGYIRV 332          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 41/128 (32.03%), Postives = 60/128 (46.88%), Query Frame = 1
Query:   13 GGVEREKDYPYTGTDGGSCKFDK----SKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKI 378
            GG+  E  YPY    G +C   +    S +   +     + ++ ++  A  V + PV+  + A       Y  GV     CG  LDHGV +VGYG      +    K YW +KNSWG +WGE GY ++
Sbjct:  213 GGLITEAAYPYRAARG-TCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGD-CGTELDHGVAVVGYG------VAEDGKAYWTVKNSWGPSWGEQGYIRV 332          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CPR1_CAEEL (Gut-specific cysteine proteinase OS=Caenorhabditis elegans GN=cpr-1 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 1
Query:   64 SCKFDKSKIAASVSNFSV----ISSDEDQMAANLVKHGPVAEGINAVW-MQTYIGGVSCPYICGKYLD-HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMV 417
            SC+   S   A   +F V    +  +   + A +  +GPV    +       Y  GV   +  GKYL  H + I+G+G+   +P       YW++ NSWG NWGE+G++KI  G + CG++S V
Sbjct:  207 SCQSGYSTAYAKDKHFGVSAYAVPKNAASIQAEIYANGPVEAAFSVYEDFYKYKSGVY-KHTAGKYLGGHAIKIIGWGTESGSP-------YWLVANSWGVNWGESGFFKIYRGDDQCGIESAV 322          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 43/134 (32.09%), Postives = 63/134 (47.01%), Query Frame = 1
Query:   16 GVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHG-PVAEGINAVWMQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 405
            GV +E DYPYTG+D  +CK +            V  ++E ++ A L +    V+  +++   Q Y  G      C      L+H V  VGYG           K  WI++NSWG +WG+ GY  + +  N CGV
Sbjct:  172 GVAKESDYPYTGSDS-TCKTNVKSFRKITGYTKVPRNNEAELKAALSQGLLDVSIDVSSAKFQLYKSGAYTDTKCKNNYFALNHEVCAVGYGV-------VDGKECWIVRNSWGTSWGDKGYINMVIEGNTCGV 297          
The following BLAST results are available for this feature:
BLAST of CX290979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CYSP2_HORVU6.742e-1132.03Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CYSP1_HORVU8.805e-1132.03Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
CPR1_CAEEL8.805e-1132.26Gut-specific cysteine proteinase OS=Caenorhabditis... [more]
ACP2_ENTHI8.805e-1132.09Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]

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Properties
Property NameValue
Genbank descriptionC03002D12Rv OF1 Citrus clementina cDNA clone C03002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290979 ID=CX290979; Name=CX290979; organism=Citrus clementina; type=EST; length=491bp
ATACTCAAGGCTGGTGGGGTTGAGCGAGAGAAGGACTACCCTTACACTGG
GACCGACGGTGGTTCCTGCAAATTTGACAAAAGCAAAATTGCTGCATCTG
TATCTAATTTCAGTGTTATTTCCTCTGATGAAGATCAAATGGCTGCAAAT
TTGGTGAAACATGGCCCTGTGGCAGAGGGTATCAATGCCGTTTGGATGCA
AACATATATTGGAGGAGTTTCATGCCCATACATTTGCGGGAAGTATTTGG
ATCATGGAGTGCTTATCGTGGGCTATGGATCTTCAGGTTTCGCCCCGATC
CGTTTCAAGGAGAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAGAA
CTGGGGAGAGAATGGATATTATAAGATCTGCATGGGTCGCAATGTCTGTG
GGGTCGACTCCATGGTCTCATCTGTAGCTGCTGGCCATACAACCTCAAGC
TAGACATTATGGAGGTTGTGCTAGGCAAGTGGAGCTTATAT
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