CX290979

Overview
NameCX290979
Unique NameCX290979
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.436e-18
Identity = 54/144 (37.50%), Postives = 77/144 (53.47%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVW--MQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 420
            I + GG++ E+ YPY   DG SCK+      A+ + F  I   E  +   +   GP++  ++A    +Q Y  G+   P    K LDHGVL+VGYG  G    + K   YW++KNSWG+ WG +GY KI   R N CG+ +  S
Sbjct:  190 IKENGGLDSEESYPYEAKDG-SCKYRAEYAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYGYEGTDSNKDK---YWLVKNSWGKEWGMDGYIKIAKDRNNHCGLATAAS 329          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   13 GGVEREKDYPYTGTDGGSCKFDKSKIAASVS---NFSVISSDEDQMAANLVKHGPVA-EGINAVWMQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 420
            GG++ E+ YPYTG +G  C +    +   V    N ++ + DE + A  LV+   VA + IN   M  Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WG+NGY+K+ MG+N+CG+ +  S
Sbjct:  225 GGLDTEEAYPYTGVNG-ICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVRPVSVAFQVINGFRM--YKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVP-------YWLIKNSWGADWGDNGYFKMEMGKNMCGIATCAS 357          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 53/140 (37.86%), Postives = 76/140 (54.29%), Query Frame = 1
Query:   16 GVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKH-GPVAEGINAVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 420
            G++ E  YPY   DG SC+FD + +AA+ S  + I+S  +      V+  GP++  I+A     Q Y  GV     C   YLDH VL VGYGS G        + +W++KNSW  +WG+ GY K+   R N CG+ ++ S
Sbjct:  188 GIDTEAAYPYEARDG-SCRFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVYYEPSCSPSYLDHAVLAVGYGSEG-------GQDFWLVKNSWATSWGDAGYIKMSRNRNNNCGIATVAS 319          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSN-FSVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVA 429
            I+K GGVE+E DY Y   +   C     K A  V N +  +  +E+++   L   GP+A  ++AV +  Y GG+   +     L+H VL+VGYG            PYWIIKNSWG ++GE+GY ++  G N CG+ + ++S A
Sbjct:  200 IMKMGGVEQEFDYSYKA-ERQPCALKPHKFATGVRNCYRYVILNEERLEDLLRYVGPIAIAVDAVDLTDYYGGI-VSFCENNGLNHAVLLVGYGVEN-------NVPYWIIKNSWGSDYGEDGYVRVRRGVNSCGMINELASSA 334          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 55/144 (38.19%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKH-GPVAEGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVA 429
            I+  GGVE+E DYPY       C     K A  V N        ++   +L++H GP+A  ++AV +  Y GGV   +     L+H VL+VGYG            PYW IKNSWG ++GENGY +I  G N CG+ + ++S A
Sbjct:  200 IMHIGGVEQEYDYPYKAVRL-PCAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVDAVDLTDYYGGV-ISFCENNGLNHAVLLVGYGIEN-------NVPYWTIKNSWGSDYGENGYVRIRRGVNSCGMINELASSA 334          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.268e-17
Identity = 54/141 (38.30%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   13 GGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVI-SSDEDQMAANLVKHGPVAEGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 420
            GG++ EK YPY   D  SC F+K  + A+   F+ I   DE +MA  +   GPV+  I+A     Q Y  GV + P    + LDHGVL+VG+G+          + YW++KNSWG  WG+ G+ K+   + N CG+ S  S
Sbjct:  234 GGIDTEKSYPYEAIDD-SCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESG------EDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASS 367          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.268e-17
Identity = 53/140 (37.86%), Postives = 72/140 (51.43%), Query Frame = 1
Query:   13 GGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINA--VWMQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 420
            GG++ E+ YPY  TD  SC +     AA+ + F  I   E  +   +   GP++  I+A     Q Y  G+     C  K LDHGVL+VGYG  G      K   +WI+KNSWG  WG NGY K+   + N CG+ +  S
Sbjct:  194 GGLDSEESYPYLATDTNSCNYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNK---FWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAAS 330          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.657e-17
Identity = 51/137 (37.23%), Postives = 71/137 (51.82%), Query Frame = 1
Query:   13 GGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVWM--QTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDS 411
            GG++ E  YPY   D  SC+FD + I A  +    +   E+ +   +   GP++  I+A     Q Y  GV     C   +LDHGVL VGYG+          K YW++KNSWG +WG+ GY K+   R N CG+ S
Sbjct:  186 GGIDTESSYPYEAEDR-SCRFDANSIGAICTGSVEVQHTEEALQEAVSGVGPISVAIDASHFSFQFYSSGVYYEQNCSPTFLDHGVLAVGYGTES-------TKDYWLVKNSWGSSWGDAGYIKMSRNRDNNCGIAS 314          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.657e-17
Identity = 53/143 (37.06%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   13 GGVEREKDYPYTGTDGGSCKFDKSKIAASVS---NFSVISSDEDQMAANLVKHGPVAEGINAVW-MQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 420
            GG++ E+ YPY G +G  CKF    +   V    N ++ + DE + A  LV+  PV+     +   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WG+ GY+K+ MG+N+CGV +  S
Sbjct:  223 GGLDTEESYPYQGVNG-ICKFKNENVGVKVLDSVNITLGAEDELKDAVGLVR--PVSVAFEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVP-------YWLIKNSWGADWGDEGYFKMEMGKNMCGVATCAS 355          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.657e-17
Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVW--MQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 420
            I + GG++ E+ YPY   DG SCK+      A+ + F  I   E  +   +   GP++  ++A    +Q Y  G+   P    K LDHGVL+VGYG  G    + K   YW++KNSWG  WG  GY KI   R N CG+ +  S
Sbjct:  190 IKENGGLDSEESYPYEAKDG-SCKYRAEFAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNK---YWLVKNSWGSEWGMEGYIKIAKDRDNHCGLATAAS 329          
The following BLAST results are available for this feature:
BLAST of CX290979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CATL1_RAT7.436e-1837.50Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
ORYC_ORYSJ9.712e-1838.46Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP2_HOMAM9.712e-1837.86Digestive cysteine proteinase 2 OS=Homarus america... [more]
CATV_NPVSE9.712e-1836.81Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATV_NPVMC9.712e-1838.19Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATL_DROME1.268e-1738.30Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATL1_BOVIN1.268e-1737.86Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
CYSP3_HOMAM1.657e-1737.23Digestive cysteine proteinase 3 OS=Homarus america... [more]
CYSP2_MAIZE1.657e-1737.06Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CATL1_MOUSE1.657e-1737.50Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC03002D12Rv OF1 Citrus clementina cDNA clone C03002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290979 ID=CX290979; Name=CX290979; organism=Citrus clementina; type=EST; length=491bp
ATACTCAAGGCTGGTGGGGTTGAGCGAGAGAAGGACTACCCTTACACTGG
GACCGACGGTGGTTCCTGCAAATTTGACAAAAGCAAAATTGCTGCATCTG
TATCTAATTTCAGTGTTATTTCCTCTGATGAAGATCAAATGGCTGCAAAT
TTGGTGAAACATGGCCCTGTGGCAGAGGGTATCAATGCCGTTTGGATGCA
AACATATATTGGAGGAGTTTCATGCCCATACATTTGCGGGAAGTATTTGG
ATCATGGAGTGCTTATCGTGGGCTATGGATCTTCAGGTTTCGCCCCGATC
CGTTTCAAGGAGAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAGAA
CTGGGGAGAGAATGGATATTATAAGATCTGCATGGGTCGCAATGTCTGTG
GGGTCGACTCCATGGTCTCATCTGTAGCTGCTGGCCATACAACCTCAAGC
TAGACATTATGGAGGTTGTGCTAGGCAAGTGGAGCTTATAT
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