CX290979

Overview
NameCX290979
Unique NameCX290979
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 45/144 (31.25%), Postives = 73/144 (50.69%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSN-FSVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVA 429
            ++  GG++ E DYPY   +G  C+ + +K    V   +  +   E+++   L   GP+   I+A  +  Y  GV   Y     L+H VL+VGY      P       +WI+KN+WG +WGE GY+++    N CG+ + + S A
Sbjct:  187 VMNMGGIQAENDYPYEANNG-DCRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDASDIVNYKRGV-IRYCANHGLNHAVLLVGYAVENGVP-------FWILKNTWGTDWGEQGYFRVQQNINACGIQNELPSSA 321          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATL1_HUMAN (Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 50/140 (35.71%), Postives = 70/140 (50.00%), Query Frame = 1
Query:   13 GGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVWMQT--YIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 420
            GG++ E+ YPY  T+  SCK++     A+ + F  I   E  +   +   GP++  I+A       Y  G+     C    +DHGVL+VGYG   F         YW++KNSWGE WG  GY K+    RN CG+ S  S
Sbjct:  194 GGLDSEESYPYEATEE-SCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG---FESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 329          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 53/145 (36.55%), Postives = 68/145 (46.90%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISS-DEDQMAANLVKHGPVAEGINAVW-MQTYIGGVSCPYICGKYLD---HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 420
            IL   G+  E  YPY G DG  CKF   K    V + + I+  DE+ M   +  + PV+           Y  G+     C K  D   H VL VGYG     P       YWI+KNSWG  WG NGY+ I  G+N+CG+ +  S
Sbjct:  193 ILYNKGIMGEDTYPYQGKDG-YCKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKNGIP-------YWIVKNSWGPQWGMNGYFLIERGKNMCGLAACAS 329          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   13 GGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKH-GPVAEGINAVW--MQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGV 405
            GGV+ E  YPY   D  +C+F+ + I A+ + +  I+   +       +  GP++  I+A     Q+Y  GV     C    LDH VL VGYGS G        + +W++KNSW  +WGE+GY K+   R N CG+
Sbjct:  186 GGVDTESSYPYEARDN-TCRFNSNTIGATCTGYVGIAQGSESALKTATRDIGPISVAIDASHRSFQSYYTGVYYEPSCSSSQLDHAVLAVGYGSEG-------GQDFWLVKNSWATSWGESGYIKMARNRNNNCGI 313          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 45/144 (31.25%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSN-FSVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVA 429
            ++  GG++ E DYPY   +G  C+ + +K    V   +  ++  E+++   L   GP+   I+A  +  Y  G+   Y     L+H VL+VGYG     P       +WI+KN+WG +WGE GY+++    N CG+ + + S A
Sbjct:  187 VMNMGGIQAENDYPYEANNG-PCRVNAAKFVVRVKKCYRYVTLFEEKLKDLLRIVGPIPVAIDASDIVGYKRGI-IRYCENHGLNHAVLLVGYGVENGIP-------FWILKNTWGADWGEQGYFRVQQNINACGIKNELPSSA 321          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.025e-15
Identity = 47/144 (32.64%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVIS-SDEDQMAANLVKHGPVAEGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 420
            I+   G++ +  YPY   D   C++D    AA+ S ++ +    ED +   +   GPV+ G++A     ++   GV     C + ++HGVL+VGYG           K YW++KNSWG N+GE GY ++   + N CG+ S  S
Sbjct:  192 IIDNKGIDSDASYPYKAMDQ-KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 327          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.025e-15
Identity = 54/142 (38.03%), Postives = 70/142 (49.30%), Query Frame = 1
Query:   16 GVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVIS-SDEDQMAANLVKHGPVA---EGINAVWMQTYIGGVSCPYICGKYLD---HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 420
            G+  E  YPY G D   CKF   K  A V + + I+ +DE+ M   +  + PV+   E  N   M  Y  G+     C K  D   H VL VGYG     P       YWI+KNSWG  WG NGY+ I  G+N+CG+ +  S
Sbjct:  198 GIMGEDTYPYKGQDD-HCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLM--YRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIP-------YWIVKNSWGPQWGMNGYFLIERGKNMCGLAACAS 329          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.645e-15
Identity = 48/143 (33.57%), Postives = 72/143 (50.35%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV------CGV 405
            I+  GG++ E DYPY G D       K+    ++ ++  ++ + +      V + PV+  I A     Q Y  G+     CG  LDHGV  VGYG+          K YWI++NSWG++WGE+GY +  M RN+      CG+
Sbjct:  204 IINNGGIDTEDDYPYKGKDERCDVNRKNAKVVTIDSYEDVTPNSETSLQKAVANQPVSVAIEAGGRAFQLYSSGIFTGK-CGTALDHGVAAVGYGTEN-------GKDYWIVRNSWGKSWGESGYVR--MERNIKASSGKCGI 336          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.645e-15
Identity = 50/141 (35.46%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   13 GGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVIS-SDEDQMAANLVKHGPVAEGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 420
            GG++ E  YPY G D  SC ++ +  AA    +  I   +E  +   + + GPV+  I+A     Q Y  GV     C +  ++H VL+VGYG+        K   YWIIKNSWGE+WG  GY  +   + N CG+ ++ S
Sbjct:  193 GGIDSEDAYPYVGQDE-SCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQ-------KGNKYWIIKNSWGESWGNKGYVLLARNKNNACGITNLAS 325          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV------CGVDSMVS 420
            I+  GG++ +++YPY+   G SCK  + ++  S++ F  ++ + +    + V   PV+  + A     Q Y  G+     CG   +HGV+IVGYG+          K YWI++NSWG+NWG  GY  I M RNV      CG+  + S
Sbjct:   75 IITNGGIDTQQNYPYSAVQG-SCKPYRLRVV-SINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGP-CGTAQNHGVVIVGYGTQS-------GKNYWIVRNSWGQNWGNQGY--IWMERNVASSAGLCGIAQLPS 210          
The following BLAST results are available for this feature:
BLAST of CX290979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CATV_NPVCD9.090e-1631.25Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATL1_HUMAN9.090e-1635.71Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2[more]
CATH_HUMAN9.090e-1636.55Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CYSP1_HOMAM1.187e-1535.29Digestive cysteine proteinase 1 OS=Homarus america... [more]
CATV_NPVAP1.551e-1531.25Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATS_HUMAN2.025e-1532.64Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATH_PIG2.025e-1538.03Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
ORYA_ORYSJ2.645e-1533.57Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CATK_RAT2.645e-1535.46Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
ERVB_TABDI4.512e-1533.78Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC03002D12Rv OF1 Citrus clementina cDNA clone C03002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290979 ID=CX290979; Name=CX290979; organism=Citrus clementina; type=EST; length=491bp
ATACTCAAGGCTGGTGGGGTTGAGCGAGAGAAGGACTACCCTTACACTGG
GACCGACGGTGGTTCCTGCAAATTTGACAAAAGCAAAATTGCTGCATCTG
TATCTAATTTCAGTGTTATTTCCTCTGATGAAGATCAAATGGCTGCAAAT
TTGGTGAAACATGGCCCTGTGGCAGAGGGTATCAATGCCGTTTGGATGCA
AACATATATTGGAGGAGTTTCATGCCCATACATTTGCGGGAAGTATTTGG
ATCATGGAGTGCTTATCGTGGGCTATGGATCTTCAGGTTTCGCCCCGATC
CGTTTCAAGGAGAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAGAA
CTGGGGAGAGAATGGATATTATAAGATCTGCATGGGTCGCAATGTCTGTG
GGGTCGACTCCATGGTCTCATCTGTAGCTGCTGGCCATACAACCTCAAGC
TAGACATTATGGAGGTTGTGCTAGGCAAGTGGAGCTTATAT
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