CX291012

Overview
NameCX291012
Unique NameCX291012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS2_MAIZE (Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.156e-61
Identity = 113/165 (68.48%), Postives = 134/165 (81.21%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMI 496
            A+RPRPGVWEY+RVNV            YL FKE+LV+ G N NFVLELDFEPFNASFPRP+LSKSIGNGV+FLNRHLS+KLFHDKESM+PLL FLR H +KG  MMLNDRI++L++LQ  LRKAEE+L+T+  +TP+SE   RFQE+GLE+GWGD A+RA E I
Sbjct:   92 AIRPRPGVWEYVRVNVSELAVEELRVPEYLQFKEQLVEEGPNNNFVLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLNDRIRSLSALQGALRKAEEHLSTLQADTPYSEFHHRFQELGLEKGWGDCAKRAQETI 256          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS1_MAIZE (Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 4.391e-61
Identity = 112/165 (67.88%), Postives = 132/165 (80.00%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMI 496
            A+RPRPGVW+YIRVNV            YL FKE+LVDG SN NFVLELDFEPFNASFPRP++SKSIGNGV+FLNRHLS+KLF DKES++PLL FL+ H +KG  MMLNDRIQ+L  LQ  LRKAEEYL +V  +TP+SE   RFQE+GLE+GWGDTA+R L+ +
Sbjct:   84 AIRPRPGVWDYIRVNVSELAVEELSVSEYLAFKEQLVDGQSNSNFVLELDFEPFNASFPRPSMSKSIGNGVQFLNRHLSSKLFQDKESLYPLLNFLKAHNYKGTTMMLNDRIQSLRGLQSSLRKAEEYLLSVPQDTPYSEFNHRFQELGLEKGWGDTAKRVLDTL 248          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS1_ORYSJ (Sucrose synthase 1 OS=Oryza sativa subsp. japonica GN=SUS1 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 5.735e-61
Identity = 111/165 (67.27%), Postives = 135/165 (81.82%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMI 496
            A+RPRPGVWEY+RVNV            YL FKE+LV+ G+N NFVLELDFEPFNASFPRP+LSKSIGNGV+FLNRHLS+KLFHDKESM+PLL FLR H +KG  MMLNDRI++L++LQ  LRKAEE+L+ ++ +TP+SE   RFQE+GLE+GWGD A+R+ E I
Sbjct:   92 AIRPRPGVWEYVRVNVSELAVELLTVPEYLQFKEQLVEEGTNNNFVLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLNDRIRSLSALQGALRKAEEHLSGLSADTPYSEFHHRFQELGLEKGWGDCAKRSQETI 256          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 1.669e-60
Identity = 111/165 (67.27%), Postives = 130/165 (78.79%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMI 496
            A+RPRPGVW+YIRVNV            YL FKE+LVDG +N NFVLELDFEPFNASFPRP++SKSIGNGV+FLNRHLS+KLF DKES++PLL FL+ H HKG  MMLNDRIQ+L  LQ  LRKAEEYL  +  +TP+SE   RFQE+GLE+GWGD A+R L+ I
Sbjct:   84 AIRPRPGVWDYIRVNVSELAVEELSVSEYLAFKEQLVDGHTNSNFVLELDFEPFNASFPRPSMSKSIGNGVQFLNRHLSSKLFQDKESLYPLLNFLKAHNHKGTTMMLNDRIQSLRGLQSSLRKAEEYLMGIPQDTPYSEFNHRFQELGLEKGWGDCAKRVLDTI 248          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 2.846e-60
Identity = 109/165 (66.06%), Postives = 131/165 (79.39%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMI 496
            A+RPRPGVWEY+R+NV            YL FKE+LVDG +  NFVLELDFEPFNASFPRP+LSKSIGNGV+FLNRHLS+KLFHDKESM+PLL FLR H +KG  MMLNDRI++L++LQ  LRKAE++L  +  +TP+SE   RFQE+GLE+GWGD A+R  E I
Sbjct:   92 AIRPRPGVWEYLRINVSQLGVEELSVPEYLQFKEQLVDGSTQNNFVLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLNDRIRSLDALQGALRKAEKHLAGITADTPYSEFHHRFQELGLEKGWGDCAQRVRETI 256          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.040e-58
Identity = 105/164 (64.02%), Postives = 127/164 (77.44%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEM 493
            A+R RPGVWEY+R+NVH           YL+ KEELV+  SNGNFVLELDF PF AS PRPTL+KSIGNGVEFLNRHLSAK+F DK+SMHPLL+FLR+H H G+ +MLN+R+Q +N LQ +LR A EYL+ +  +TP+S+   +FQEIG ERGWGDTAE   EM
Sbjct:   83 AIRLRPGVWEYVRLNVHQLVVEELTVPDYLYLKEELVNASSNGNFVLELDFAPFTASIPRPTLTKSIGNGVEFLNRHLSAKMFQDKDSMHPLLDFLRLHHHNGRTLMLNNRVQTVNGLQDILRIAGEYLSKLPSDTPYSDFEHKFQEIGFERGWGDTAEHVSEM 246          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 2.664e-58
Identity = 106/163 (65.03%), Postives = 127/163 (77.91%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALE 490
            A+RPRPGVWEY+RVNV            YL FKEELVDG    NF LELDFEPFNASFPRP+LSKSIGNGV+FLNRHLS+KLFHDKESM+PLL FL+ H + G +MMLNDRIQ L +LQ  LR+A+EY+ ++  +TP+S+   RFQE+GLE+GWGD A+R  E
Sbjct:   88 AIRPRPGVWEYVRVNVSELAVEELTVPEYLQFKEELVDGSGQSNFTLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLKEHHYNGTSMMLNDRIQTLGALQASLRRADEYVLSLPLDTPYSDFGHRFQELGLEKGWGDNAKRVHE 250          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS2_HORVU (Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 2.664e-58
Identity = 107/165 (64.85%), Postives = 130/165 (78.79%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMI 496
            A+RPRPGVWEY+RVNV            YL FKE+L +G ++ NFVLELDF PFNASFPRP+LSKSIGNGV+FLNRHLS+KLFHDKESM+PLL FLR H +KG  MMLNDRI++L +LQ  LRKAE +L+ +  +TP++E   RFQE+GLE+GWGD A+RA E I
Sbjct:   92 AIRPRPGVWEYVRVNVSELGVEELSVLRYLQFKEQLANGSTDNNFVLELDFGPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLNDRIRSLGTLQGALRKAETHLSGLPADTPYTEFHHRFQELGLEKGWGDCAQRASETI 256          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS1_TULGE (Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.555e-56
Identity = 104/165 (63.03%), Postives = 129/165 (78.18%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMI 496
            A+RPRPGVWEY+RVNV+           YL FKE+LVD  S  NFVLE+DFEPFNA+ PRP+LSKSIGNGV+FLNRHLS+KLFHDKES++PLL FLR H +KG  +MLNDR+Q+L++LQ  LRKA+ YL +++ +TP+SE    FQ +GLE+GWGDTA R  E I
Sbjct:   88 AIRPRPGVWEYVRVNVNELAVEECSE--YLKFKEDLVDRSSQSNFVLEMDFEPFNANVPRPSLSKSIGNGVQFLNRHLSSKLFHDKESLYPLLNFLREHNYKGTTLMLNDRLQSLSALQTALRKADRYLLSISKDTPYSEFNHSFQVLGLEKGWGDTASRVSENI 250          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUSY_BETVU (Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS1 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.048e-54
Identity = 103/165 (62.42%), Postives = 122/165 (73.94%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMI 496
            AVRPRPGVWEY+RVNV            YLHFKEELVDG ++ ++VLELDFEPFN S PRPT S SIGNGV+FLNRHLS+ +F +K+ + PLL+FLRVH HKG  MMLNDRIQ +  LQ  L KAE+YL  +  +TP+SE     Q +G ERGWGDTAER LEM+
Sbjct:   32 AVRPRPGVWEYVRVNVSELNVEQLTVSEYLHFKEELVDGKADDHYVLELDFEPFNESVPRPTRSSSIGNGVQFLNRHLSSSMFCNKDCLEPLLDFLRVHKHKGVVMMLNDRIQTIQRLQSALSKAEDYLIKLPADTPYSEFEFVIQGMGFERGWGDTAERVLEMM 196          
The following BLAST results are available for this feature:
BLAST of CX291012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUS2_MAIZE1.156e-6168.48Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1[more]
SUS1_MAIZE4.391e-6167.88Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1[more]
SUS1_ORYSJ5.735e-6167.27Sucrose synthase 1 OS=Oryza sativa subsp. japonica... [more]
SUS2_ORYSJ1.669e-6067.27Sucrose synthase 2 OS=Oryza sativa subsp. japonica... [more]
SUS3_ORYSJ2.846e-6066.06Sucrose synthase 3 OS=Oryza sativa subsp. japonica... [more]
SUS2_DAUCA2.040e-5864.02Sucrose synthase isoform 2 OS=Daucus carota PE=2 S... [more]
SUS2_TULGE2.664e-5865.03Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS2_HORVU2.664e-5864.85Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 ... [more]
SUS1_TULGE5.555e-5663.03Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1[more]
SUSY_BETVU1.048e-5462.42Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS... [more]

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Properties
Property NameValue
Genbank descriptionC03002H08Rv OF1 Citrus clementina cDNA clone C03002H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291012 ID=CX291012; Name=CX291012; organism=Citrus clementina; type=EST; length=501bp
TGCCGTGCGTCCAAGGCCCGGTGTGTGGGAGTACATCCGAGTGAATGTCC
ATGCCCTTGTCGTTGAGGAGCTGCTTGTAGCCGAGTACCTGCACTTCAAG
GAGGAACTTGTCGATGGAGGCTCCAATGGCAACTTCGTGCTTGAGTTGGA
TTTTGAGCCATTCAATGCCTCGTTCCCTCGCCCAACTCTTTCAAAGTCTA
TTGGAAATGGTGTGGAATTCCTTAACCGCCACCTTTCTGCGAAGCTCTTC
CATGACAAGGAGAGCATGCATCCACTGCTTGAATTTCTCCGCGTCCACTG
CCACAAGGGCAAAAACATGATGCTGAATGACAGAATTCAGAACTTGAATT
CTCTTCAACACGTTCTGAGGAAGGCAGAGGAGTATCTGACCACAGTGGCA
CCAGAAACGCCATTCTCTGAGTTGGCACTAAGATTTCAGGAGATTGGTTT
GGAGAGAGGTTGGGGTGATACTGCTGAGCGTGCACTTGAGATGATTCAGC
T
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