CX291018

Overview
NameCX291018
Unique NameCX291018
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_SYMTH (Elongation factor Tu OS=Symbiobacterium thermophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 2
Query:   47 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            K  AE  K  F     +DK   ERERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   34 KVLAEKGKAQFMAYDAIDKAPEERERGITINTSHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_LACPL (Elongation factor Tu OS=Lactobacillus plantarum GN=tuf PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:   50 IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_KOCRD (Elongation factor Tu OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=tuf PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    E++RGITI+IA  +++T K +   +DAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:   52 IDSAPEEKQRGITINIAHIEYQTDKRHYAHVDAPGHADYVKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPYLLVALNKSD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_HELMI (Elongation factor Tu OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=tuf PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 2
Query:   56 AEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +++ K SFK    +D    ERERGITI+ A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   37 SKVGKASFKKYDEIDAAPEERERGITINTAHVEYETDNRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVWLNKAD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_ANADF (Elongation factor Tu OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2
Query:   47 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 400
            K  A   +  F     +DK   ERERGITI  A  ++ T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D    K
Sbjct:   34 KYCATQGRAQFMAYDQIDKAPEERERGITIATAHVEYSTDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYMVVFLNKVDMVDDK 144          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: CYSN_ECOSE (Sulfate adenylyltransferase subunit 1 OS=Escherichia coli (strain SE11) GN=cysN PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 2
Query:   86 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK 433
            A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I K
Sbjct:   79 ALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTRIRK 185          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: CYSN_ECO24 (Sulfate adenylyltransferase subunit 1 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cysN PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 2
Query:   86 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK 433
            A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I K
Sbjct:   79 ALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTRIRK 185          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_PEDPA (Elongation factor Tu OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=tuf PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.525e-16
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:   50 IDAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAHQVGVDYIVVFLNKTD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_NOVAD (Elongation factor Tu OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=tuf PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.525e-16
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 2
Query:   47 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            K  AE     F     +DK   ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LLA  +GV  ++   NK+D
Sbjct:   34 KVLAEQGGAEFTDYANIDKAPEERERGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLARQVGVPALVVYMNKVD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_NOCSJ (Elongation factor Tu OS=Nocardioides sp. (strain BAA-499 / JS614) GN=tuf PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.525e-16
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPALVVALNKCD 141          
The following BLAST results are available for this feature:
BLAST of CX291018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SYMTH4.996e-1640.71Elongation factor Tu OS=Symbiobacterium thermophil... [more]
EFTU_LACPL4.996e-1646.39Elongation factor Tu OS=Lactobacillus plantarum GN... [more]
EFTU_KOCRD4.996e-1643.30Elongation factor Tu OS=Kocuria rhizophila (strain... [more]
EFTU_HELMI4.996e-1641.82Elongation factor Tu OS=Heliobacterium modesticald... [more]
EFTU_ANADF4.996e-1639.83Elongation factor Tu OS=Anaeromyxobacter sp. (stra... [more]
CYSN_ECOSE4.996e-1638.79Sulfate adenylyltransferase subunit 1 OS=Escherich... [more]
CYSN_ECO244.996e-1638.79Sulfate adenylyltransferase subunit 1 OS=Escherich... [more]
EFTU_PEDPA6.525e-1645.36Elongation factor Tu OS=Pediococcus pentosaceus (s... [more]
EFTU_NOVAD6.525e-1640.71Elongation factor Tu OS=Novosphingobium aromaticiv... [more]
EFTU_NOCSJ6.525e-1644.33Elongation factor Tu OS=Nocardioides sp. (strain B... [more]

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Properties
Property NameValue
Genbank descriptionC03003A04SK OF2 Citrus clementina cDNA clone C03003A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291018 ID=CX291018; Name=CX291018; organism=Citrus clementina; type=EST; length=433bp
CTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGG
AAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGAC
AAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTG
GAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGGAC
ATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGT
GCCGTCCTCATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTC
CAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTG
TGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAG
TATTCAAAGGCTAGGTACGATGAAATTGTGAAG
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