CX291018

Overview
NameCX291018
Unique NameCX291018
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_EUBR3 (Elongation factor Tu OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=tuf PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LL+  +GV  +I   NK D
Sbjct:   51 IDKAPEERERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGVM-------AQTKEHILLSRQVGVPYIIVFLNKCD 140          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_CLOTE (Elongation factor Tu OS=Clostridium tetani GN=tufA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 2
Query:   71 RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            ++FKY  + DK   E+ERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D
Sbjct:   43 KAFKYDEI-DKAPEEKERGITISTSHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVEHIVVFLNKAD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_BORRA (Elongation factor Tu OS=Borrelia recurrentis (strain A1) GN=tuf PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 400
            +D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+
Sbjct:   51 IDNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPE 145          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_BORDL (Elongation factor Tu OS=Borrelia duttonii (strain Ly) GN=tuf PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 400
            +D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+
Sbjct:   51 IDNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPE 145          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU2_PELTS (Elongation factor Tu 2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 2
Query:   56 AEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            A + K   K    +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   37 ATVGKAQVKKYDKIDNAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKAD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU1_PELTS (Elongation factor Tu 1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 2
Query:   56 AEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            A + K   K    +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   37 ATVGKAQVKKYDEIDNAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKAD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: CYSN_METEP (Sulfate adenylyltransferase subunit 1 OS=Methylobacterium extorquens (strain PA1) GN=cysN PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 2
Query:   86 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIV 430
            A ++D L+AERE+GITID+A   F T +    V D PGH  + +NM TG S AD AV+++D+  G          Q+R HALL   LG++++    NKMD     +S+ +++ IV
Sbjct:   76 ALLVDGLQAEREQGITIDVAYRFFSTDRRSFIVADTPGHEQYTRNMATGASTADLAVILVDARHG-------LTRQSRRHALLVSLLGIRRVALAINKMDLV--GWSQDKFEAIV 181          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: CYSNC_PSEAE (Bifunctional enzyme cysN/cysC OS=Pseudomonas aeruginosa GN=cysNC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:   86 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+++ID+  G          QTR H+ +A  LG++ ++   NKMD
Sbjct:   76 ALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILIDARYG-------VQTQTRRHSFIASLLGIRHIVVAINKMD 168          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: CYSNC_MYCTU (Bifunctional enzyme cysN/cysC OS=Mycobacterium tuberculosis GN=cysNC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:   86 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            A V D L+AERE+GITID+A   F T K    + D PGH  + +NM+TG S A   ++++D+  G  E       Q+R HA LA  LG++ ++   NKMD
Sbjct:   54 ALVTDGLRAEREQGITIDVAYRYFATPKRKFIIADTPGHIQYTRNMVTGASTAQLVIVLVDARHGLLE-------QSRRHAFLASLLGIRHLVLAVNKMD 146          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_THEFY (Elongation factor Tu OS=Thermobifida fusca (strain YX) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ERERGITI I+  +++T   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   52 IDKAPEERERGITISISHVEYQTESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKSD 141          
The following BLAST results are available for this feature:
BLAST of CX291018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_EUBR31.899e-1544.33Elongation factor Tu OS=Eubacterium rectale (strai... [more]
EFTU_CLOTE1.899e-1540.95Elongation factor Tu OS=Clostridium tetani GN=tufA... [more]
EFTU_BORRA1.899e-1539.22Elongation factor Tu OS=Borrelia recurrentis (stra... [more]
EFTU_BORDL1.899e-1539.22Elongation factor Tu OS=Borrelia duttonii (strain ... [more]
EFTU2_PELTS1.899e-1540.91Elongation factor Tu 2 OS=Pelotomaculum thermoprop... [more]
EFTU1_PELTS1.899e-1540.91Elongation factor Tu 1 OS=Pelotomaculum thermoprop... [more]
CYSN_METEP1.899e-1540.00Sulfate adenylyltransferase subunit 1 OS=Methyloba... [more]
CYSNC_PSEAE1.899e-1541.00Bifunctional enzyme cysN/cysC OS=Pseudomonas aerug... [more]
CYSNC_MYCTU1.899e-1542.00Bifunctional enzyme cysN/cysC OS=Mycobacterium tub... [more]
EFTU_THEFY2.480e-1542.27Elongation factor Tu OS=Thermobifida fusca (strain... [more]

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Properties
Property NameValue
Genbank descriptionC03003A04SK OF2 Citrus clementina cDNA clone C03003A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291018 ID=CX291018; Name=CX291018; organism=Citrus clementina; type=EST; length=433bp
CTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGG
AAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGAC
AAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTG
GAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGGAC
ATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGT
GCCGTCCTCATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTC
CAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTG
TGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAG
TATTCAAAGGCTAGGTACGATGAAATTGTGAAG
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